Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G50430 - ( UBC33 (ubiquitin-conjugating enzyme 33) ubiquitin-protein ligase )
18 Proteins interacs with AT5G50430Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G16640 | PredictedAffinity Capture-MS | FSW = 0.0448
| Unknown | TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) |
AT1G02130 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0369
| Unknown | ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING |
AT1G64790 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0178
| Unknown | BINDING |
AT5G13710 | PredictedPhenotypic Enhancement | FSW = 0.0210
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT5G22330 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0244
| Unknown | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING |
AT5G52640 | Predictedtwo hybrid | FSW = 0.0131
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G30110 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0195
| Unknown | ATUBA1 UBIQUITIN ACTIVATING ENZYME/ UBIQUITIN-PROTEIN LIGASE |
AT4G19150 | PredictedGene fusion method | FSW = 0.0462
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT1G79830 | PredictedPhenotypic Enhancement | FSW = 0.0544
| Unknown | GC5 (GOLGIN CANDIDATE 5) PROTEIN BINDING |
AT1G72560 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0224
| Unknown | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT4G30990 | Predictedinteraction prediction | FSW = 0.0146
| Unknown | BINDING |
AT1G48760 | PredictedPhenotypic Suppression | FSW = 0.0356
| Unknown | DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT3G55380 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancementinteraction prediction | FSW = 0.0731
| Unknown | UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE |
AT3G60860 | PredictedAffinity Capture-MS | FSW = 0.0352
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT4G30991 | PredictedAffinity Capture-MS | FSW = 0.0136
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT2G17980 | PredictedPhenotypic Suppression | FSW = 0.0481
| Unknown | ATSLY1 PROTEIN TRANSPORTER |
AT4G21540 | PredictedPhenotypic Enhancement | FSW = 0.0744
| Unknown | SPHK1 (SPHINGOSINE KINASE 1) D-ERYTHRO-SPHINGOSINE KINASE/ DIACYLGLYCEROL KINASE/ SPHINGANINE KINASE |
AT1G01960 | Predictedinteraction prediction | FSW = 0.0386
| Unknown | EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454