Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G55380 - ( UBC14 (ubiquitin-conjugating enzyme 14) ubiquitin-protein ligase )
51 Proteins interacs with AT3G55380Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G66680 | PredictedPhenotypic Suppression | FSW = 0.0603
| Unknown | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT4G01320 | PredictedPhenotypic Enhancement | FSW = 0.0937
| Unknown | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
AT1G36340 | PredictedPhylogenetic profile method | FSW = 0.3939
| Unknown | UBC31 (UBIQUITIN-CONJUGATING ENZYME 31) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE |
AT1G64790 | PredictedPhenotypic Suppression | FSW = 0.0346
| Unknown | BINDING |
AT5G13710 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0759
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT1G76490 | Predictedinterologs mapping | FSW = 0.1146
| Unknown | HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1) HYDROXYMETHYLGLUTARYL-COA REDUCTASE |
AT1G07420 | PredictedPhenotypic Enhancement | FSW = 0.0511
| Unknown | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT4G21180 | PredictedPhenotypic Enhancement | FSW = 0.0898
| Unknown | ATERDJ2B HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT1G11680 | PredictedSynthetic Lethality | FSW = 0.0292
| Unknown | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0206
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G08820 | PredictedPhenotypic Enhancement | FSW = 0.0487
| Unknown | VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2) STRUCTURAL MOLECULE |
AT1G16890 | PredictedShared biological functionPhylogenetic profile method | FSW = 0.2583
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT1G65040 | PredictedAffinity Capture-Western | FSW = 0.0563
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G64230 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.2536
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT1G60740 | Predictedinteraction prediction | FSW = 0.0655
| Unknown | PEROXIREDOXIN TYPE 2 PUTATIVE |
AT2G17520 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.0768
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
AT2G06210 | PredictedPhenotypic Suppression | FSW = 0.0443
| Unknown | ELF8 (EARLY FLOWERING 8) BINDING |
AT1G22200 | PredictedPhenotypic Enhancement | FSW = 0.0408
| Unknown | UNKNOWN PROTEIN |
AT1G65970 | PredictedAffinity Capture-MS | FSW = 0.0672
| Unknown | TPX2 (THIOREDOXIN-DEPENDENT PEROXIDASE 2) ANTIOXIDANT/ OXIDOREDUCTASE |
AT3G18860 | PredictedPhenotypic Suppression | FSW = 0.0722
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G22480 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0742
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT1G06080 | PredictedPhenotypic Enhancement | FSW = 0.0709
| Unknown | ADS1 (DELTA 9 DESATURASE 1) OXIDOREDUCTASE |
AT1G26450 | PredictedPhenotypic Suppression | FSW = 0.0443
| Unknown | BETA-13-GLUCANASE-RELATED |
AT1G51710 | PredictedSynthetic Rescue | FSW = 0.0914
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G54140 | PredictedPhenotypic Enhancement | FSW = 0.0339
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT1G55300 | PredictedPhenotypic Enhancement | FSW = 0.0300
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G57620 | PredictedPhenotypic Enhancement | FSW = 0.0563
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT4G17910 | PredictedPhenotypic Enhancement | FSW = 0.0763
| Unknown | TRANSFERASE TRANSFERRING ACYL GROUPS |
AT4G34100 | PredictedAffinity Capture-MS | FSW = 0.1129
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G27970 | PredictedPhenotypic Enhancement | FSW = 0.0738
| Unknown | BINDING |
AT5G50430 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancementinteraction prediction | FSW = 0.0731
| Unknown | UBC33 (UBIQUITIN-CONJUGATING ENZYME 33) UBIQUITIN-PROTEIN LIGASE |
AT4G05320 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0279
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
AT5G02880 | PredictedAffinity Capture-Western | FSW = 0.0205
| Unknown | UPL4 UBIQUITIN-PROTEIN LIGASE |
AT5G10260 | PredictedPhenotypic Suppression | FSW = 0.0678
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G23290 | PredictedPhenotypic Enhancement | FSW = 0.0236
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G48120 | PredictedPhenotypic Enhancement | FSW = 0.0577
| Unknown | BINDING |
AT5G41700 | Predictedinteraction predictionPhylogenetic profile methodCo-expression | FSW = 0.2140
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G41340 | Predictedinteraction prediction | FSW = 0.0476
| Unknown | UBC4 (UBIQUITIN CONJUGATING ENZYME 4) UBIQUITIN-PROTEIN LIGASE |
AT5G56150 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.2986
| Unknown | UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE |
AT3G08700 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3778
| Unknown | UBC12 (UBIQUITIN-CONJUGATING ENZYME 12) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE |
AT2G16740 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.0980
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT3G46460 | PredictedShared biological functionGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6222
| Unknown | UBC13 (UBIQUITIN-CONJUGATING ENZYME 13) UBIQUITIN-PROTEIN LIGASE |
AT3G08690 | PredictedShared biological functionGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3703
| Unknown | UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) UBIQUITIN-PROTEIN LIGASE |
AT5G62540 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.3673
| Unknown | UBC3 (UBIQUITIN-CONJUGATING ENZYME 3) UBIQUITIN-PROTEIN LIGASE |
AT2G02760 | PredictedShared biological functionPhylogenetic profile method | FSW = 0.1512
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT1G78870 | PredictedShared biological functionPhylogenetic profile method | FSW = 0.2501
| Unknown | UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G25760 | PredictedPhylogenetic profile method | FSW = 0.4025
| Unknown | PEX4 (PEROXIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G14400 | PredictedPhylogenetic profile method | FSW = 0.1287
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT5G53300 | PredictedPhylogenetic profile method | FSW = 0.3192
| Unknown | UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE |
AT5G42990 | PredictedPhylogenetic profile method | FSW = 0.3765
| Unknown | UBC18 (UBIQUITIN-CONJUGATING ENZYME 18) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE |
AT4G27960 | PredictedPhylogenetic profile method | FSW = 0.2571
| Unknown | UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454