Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G42990 - ( UBC18 (ubiquitin-conjugating enzyme 18) small conjugating protein ligase/ ubiquitin-protein ligase )
23 Proteins interacs with AT5G42990Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G36340 | PredictedPhylogenetic profile method | FSW = 0.5689
| Unknown | UBC31 (UBIQUITIN-CONJUGATING ENZYME 31) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE |
AT1G16890 | PredictedPhylogenetic profile method | FSW = 0.4830
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT1G64230 | PredictedPhylogenetic profile method | FSW = 0.3606
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT3G20060 | PredictedPhylogenetic profile method | FSW = 0.1815
| Unknown | UBC19 (UBIQUITIN-CONJUGATING ENZYME19) UBIQUITIN-PROTEIN LIGASE |
AT5G65740 | Predictedtwo hybridtwo hybrid | FSW = 0.0683
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT2G23780 | Predictedtwo hybridEnriched domain pairCo-expression | FSW = 0.0775
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT1G19310 | Predictedtwo hybridEnriched domain pairCo-expression | FSW = 0.1815
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G25760 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6266
| Unknown | PEX4 (PEROXIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G75440 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1048
| Unknown | UBC16 (UBIQUITIN-CONJUGATING ENZYME 16) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE |
AT1G45050 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.5319
| Unknown | ATUBC2-1 UBIQUITIN-PROTEIN LIGASE |
AT4G36410 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1048
| Unknown | UBC17 (UBIQUITIN-CONJUGATING ENZYME 17) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE |
AT3G08700 | PredictedPhylogenetic profile method | FSW = 0.5447
| Unknown | UBC12 (UBIQUITIN-CONJUGATING ENZYME 12) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE |
AT3G46460 | PredictedPhylogenetic profile method | FSW = 0.4211
| Unknown | UBC13 (UBIQUITIN-CONJUGATING ENZYME 13) UBIQUITIN-PROTEIN LIGASE |
AT3G57870 | PredictedPhylogenetic profile method | FSW = 0.0448
| Unknown | SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE |
AT5G56150 | PredictedPhylogenetic profile method | FSW = 0.4977
| Unknown | UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE |
AT1G78870 | PredictedPhylogenetic profile method | FSW = 0.3879
| Unknown | UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G08690 | PredictedPhylogenetic profile method | FSW = 0.5754
| Unknown | UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) UBIQUITIN-PROTEIN LIGASE |
AT5G41700 | PredictedPhylogenetic profile method | FSW = 0.1684
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G02760 | PredictedPhylogenetic profile method | FSW = 0.1533
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT4G27960 | PredictedPhylogenetic profile method | FSW = 0.3657
| Unknown | UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE |
AT5G53300 | PredictedPhylogenetic profile method | FSW = 0.4571
| Unknown | UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE |
AT2G16740 | PredictedPhylogenetic profile method | FSW = 0.1369
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT3G55380 | PredictedPhylogenetic profile method | FSW = 0.3765
| Unknown | UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454