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AT2G16740 - ( UBC29 (ubiquitin-conjugating enzyme 29) ubiquitin-protein ligase )

170 Proteins interacs with AT2G16740

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G32470	Predicted Synthetic Lethality	FSW = 0.1722	Unknown	UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE
AT3G49910	Predicted Affinity Capture-MS	FSW = 0.1522	Unknown	60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT2G36160	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2498	Unknown	40S RIBOSOMAL PROTEIN S14 (RPS14A)
AT2G36530	Predicted biochemical	FSW = 0.0201	Unknown	LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE
AT3G12580	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2385	Unknown	HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING
AT2G20450	Predicted Affinity Capture-MS	FSW = 0.2160	Unknown	60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT1G11260	Predicted Affinity Capture-MS	FSW = 0.0454	Unknown	STP1 (SUGAR TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT4G36750	Predicted Affinity Capture-MS	FSW = 0.0070	Unknown	QUINONE REDUCTASE FAMILY PROTEIN
AT5G12010	Predicted Affinity Capture-MS	FSW = 0.0183	Unknown	UNKNOWN PROTEIN
AT1G54270	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0957	Unknown	EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT3G28710	Predicted Affinity Capture-MS	FSW = 0.0399	Unknown	H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE
AT1G07930	Predicted Affinity Capture-MS	FSW = 0.1626	Unknown	ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT1G36340	Predicted Phylogenetic profile method Co-expression	FSW = 0.1583	Unknown	UBC31 (UBIQUITIN-CONJUGATING ENZYME 31) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT3G13080	Predicted Affinity Capture-MS	FSW = 0.1259	Unknown	ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE
AT3G20390	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3709	Unknown	ENDORIBONUCLEASE L-PSP FAMILY PROTEIN
AT3G08950	Predicted Affinity Capture-MS	FSW = 0.1779	Unknown	ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN
AT3G19980	Predicted Affinity Capture-MS	FSW = 0.1378	Unknown	ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G18540	Predicted Affinity Capture-MS	FSW = 0.2964	Unknown	60S RIBOSOMAL PROTEIN L6 (RPL6A)
AT1G07890	Predicted Affinity Capture-MS	FSW = 0.0273	Unknown	APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE
AT3G48170	Predicted Synthetic Lethality	FSW = 0.0106	Unknown	ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT5G24400	Predicted Affinity Capture-MS	FSW = 0.3659	Unknown	EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC
AT1G74710	Predicted Affinity Capture-MS	FSW = 0.0283	Unknown	ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT3G16950	Predicted Affinity Capture-MS	FSW = 0.2045	Unknown	LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE
AT1G07790	Predicted Synthetic Lethality	FSW = 0.0034	Unknown	HTB1 DNA BINDING
AT2G31170	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3757	Unknown	SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT4G26970	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2126	Unknown	ACONITATE HYDRATASE/ COPPER ION BINDING
AT1G21640	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2319	Unknown	NADK2 NAD+ KINASE/ CALMODULIN BINDING
AT3G19160	Predicted Affinity Capture-MS Affinity Capture-MS Synthetic Lethality	FSW = 0.2112	Unknown	ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE
AT5G14320	Predicted Co-purification	FSW = 0.0054	Unknown	30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13)
AT3G11630	Predicted Affinity Capture-MS	FSW = 0.1985	Unknown	2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT1G51040	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.2932	Unknown	PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE
AT3G23940	Predicted Affinity Capture-MS	FSW = 0.0138	Unknown	DEHYDRATASE FAMILY
AT1G61520	Predicted Synthetic Lethality	FSW = 0.0039	Unknown	LHCA3 CHLOROPHYLL BINDING
AT5G20010	Predicted Affinity Capture-MS	FSW = 0.2582	Unknown	RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING
AT5G60390	Predicted Affinity Capture-MS	FSW = 0.1330	Unknown	ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT1G27970	Predicted Affinity Capture-MS	FSW = 0.2648	Unknown	NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT2G14120	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0946	Unknown	DYNAMIN-LIKE PROTEIN 2B (ADL2B)
AT3G61430	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3258	Unknown	PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL
AT4G28950	Predicted Affinity Capture-MS	FSW = 0.1752	Unknown	ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING
AT2G21540	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2194	Unknown	SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER
AT3G09740	Predicted Affinity Capture-MS	FSW = 0.2098	Unknown	SYP71 (SYNTAXIN OF PLANTS 71) PROTEIN TRANSPORTER
AT1G55690	Predicted Affinity Capture-Western	FSW = 0.1163	Unknown	SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT1G63290	Predicted Affinity Capture-MS	FSW = 0.2892	Unknown	RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE
AT1G11250	Predicted Affinity Capture-MS	FSW = 0.2981	Unknown	SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR
AT1G20090	Predicted interologs mapping	FSW = 0.0155	Unknown	ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING
AT2G47160	Predicted Colocalization Affinity Capture-Western	FSW = 0.0388	Unknown	BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER
AT5G62300	Predicted Affinity Capture-MS	FSW = 0.1932	Unknown	40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT5G23900	Predicted Affinity Capture-MS	FSW = 0.0602	Unknown	60S RIBOSOMAL PROTEIN L13 (RPL13D)
AT5G17310	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0854	Unknown	UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE PUTATIVE / UDP-GLUCOSE PYROPHOSPHORYLASE PUTATIVE / UGPASE PUTATIVE
AT1G13320	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1049	Unknown	PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT1G16890	Predicted Shared biological function Phylogenetic profile method	FSW = 0.1033	Unknown	UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT1G32090	Predicted Affinity Capture-MS	FSW = 0.0116	Unknown	EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT4G22120	Predicted Affinity Capture-MS	FSW = 0.2362	Unknown	EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT4G24400	Predicted Affinity Capture-MS Synthetic Lethality	FSW = 0.3492	Unknown	CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE
AT1G59740	Predicted Affinity Capture-MS	FSW = 0.0229	Unknown	PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT1G20760	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3464	Unknown	CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT1G64230	Predicted Shared biological function Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.1117	Unknown	UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT4G35310	Predicted Affinity Capture-MS	FSW = 0.2981	Unknown	CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G70580	Predicted Affinity Capture-MS	FSW = 0.0769	Unknown	AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE
AT4G28860	Predicted Affinity Capture-MS	FSW = 0.0031	Unknown	CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G30260	Predicted Synthetic Lethality	FSW = 0.0207	Unknown	U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G74060	Predicted Affinity Capture-MS	FSW = 0.1317	Unknown	60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT4G26600	Predicted Affinity Capture-MS Affinity Capture-MS Synthetic Lethality Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western two hybrid	FSW = 0.2802	Unknown	NUCLEOLAR PROTEIN PUTATIVE
AT2G44510	Predicted Synthetic Lethality	FSW = 0.0032	Unknown	P21CIP1-BINDING PROTEIN-RELATED
AT5G44500	Predicted Affinity Capture-MS	FSW = 0.2119	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE
AT2G34440	Predicted Affinity Capture-MS	FSW = 0.0103	Unknown	AGL29 (AGAMOUS-LIKE 29) TRANSCRIPTION FACTOR
AT1G72560	Predicted Affinity Capture-MS	FSW = 0.0107	Unknown	PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING
AT4G04870	Predicted Affinity Capture-MS	FSW = 0.0262	Unknown	CLS (CARDIOLIPIN SYNTHASE) CARDIOLIPIN SYNTHASE/ PHOSPHATIDYLTRANSFERASE
AT1G34065	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1849	Unknown	SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING
AT2G18450	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3767	Unknown	SDH1-2 SUCCINATE DEHYDROGENASE
AT3G10920	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1367	Unknown	MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE
AT1G72480	Predicted Affinity Capture-MS	FSW = 0.1658	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK)
AT2G13650	Predicted Affinity Capture-MS	FSW = 0.1727	Unknown	GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
AT4G30990	Predicted Affinity Capture-MS	FSW = 0.2274	Unknown	BINDING
AT2G14610	Predicted Synthetic Lethality	FSW = 0.0194	Unknown	PR1 (PATHOGENESIS-RELATED GENE 1)
AT1G50050	Predicted Affinity Capture-MS	FSW = 0.0207	Unknown	PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT4G33720	Predicted Affinity Capture-MS Affinity Capture-Western	FSW = 0.1664	Unknown	PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT1G76400	Predicted Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS	FSW = 0.1163	Unknown	RIBOPHORIN I FAMILY PROTEIN
AT2G33110	Predicted Synthetic Lethality	FSW = 0.0432	Unknown	ATVAMP723 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 723)
AT3G08730	Predicted Affinity Capture-MS	FSW = 0.1420	Unknown	PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G35640	Predicted two hybrid two hybrid	FSW = 0.1081	Unknown	ATSERAT32 (SERINE ACETYLTRANSFERASE 32) ACETYLTRANSFERASE/ SERINE O-ACETYLTRANSFERASE
AT3G16050	Predicted Affinity Capture-MS	FSW = 0.2848	Unknown	A37 PROTEIN HETERODIMERIZATION
AT3G51300	Predicted Synthetic Lethality	FSW = 0.0131	Unknown	ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1) GTP BINDING / GTPASE ACTIVATING PROTEIN BINDING / GTPASE/ PROTEIN BINDING
AT3G52580	Predicted Affinity Capture-MS	FSW = 0.2026	Unknown	40S RIBOSOMAL PROTEIN S14 (RPS14C)
AT3G13550	Predicted Phylogenetic profile method	FSW = 0.0743	Unknown	FUS9 (FUSCA 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G10920	Predicted Affinity Capture-MS Colocalization Affinity Capture-Western	FSW = 0.0548	Unknown	KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR
AT3G19510	Predicted Affinity Capture-MS	FSW = 0.0129	Unknown	HAT31 DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT3G12530	Predicted Affinity Capture-MS	FSW = 0.3359	Unknown	PSF2
AT2G27550	Predicted Affinity Capture-MS	FSW = 0.0782	Unknown	ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) PHOSPHATIDYLETHANOLAMINE BINDING
AT1G20920	Predicted Affinity Capture-MS	FSW = 0.2355	Unknown	DEAD BOX RNA HELICASE PUTATIVE
AT1G24706	Predicted Affinity Capture-MS	FSW = 0.1958	Unknown	UNKNOWN PROTEIN
AT1G54290	Predicted Affinity Capture-MS two hybrid Affinity Capture-Western	FSW = 0.1895	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT1G55730	Predicted Affinity Capture-MS	FSW = 0.3002	Unknown	ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER
AT1G62880	Predicted Affinity Capture-MS	FSW = 0.1475	Unknown	CORNICHON FAMILY PROTEIN
AT1G64480	Predicted Affinity Capture-MS	FSW = 0.2182	Unknown	CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING
AT1G71530	Predicted Synthetic Lethality	FSW = 0.0114	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT2G01770	Predicted Affinity Capture-MS	FSW = 0.1459	Unknown	VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER
AT2G13620	Predicted Synthetic Lethality	FSW = 0.0092	Unknown	ATCHX15 MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER
AT2G16090	Predicted Affinity Capture-MS Affinity Capture-Western	FSW = 0.2866	Unknown	ZINC FINGER PROTEIN-RELATED
AT1G05785	Predicted Affinity Capture-MS	FSW = 0.0668	Unknown	GOT1-LIKE FAMILY PROTEIN
AT1G16360	Predicted Affinity Capture-MS	FSW = 0.0262	Unknown	LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT1G25155	Predicted Affinity Capture-MS	FSW = 0.0142	Unknown	ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G34460	Predicted Affinity Capture-MS	FSW = 0.0701	Unknown	CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G62850	Predicted Affinity Capture-MS	FSW = 0.0258	Unknown	TRANSLATION RELEASE FACTOR
AT1G78290	Predicted Affinity Capture-MS	FSW = 0.1763	Unknown	SERINE/THREONINE PROTEIN KINASE PUTATIVE
AT2G03040	Predicted Affinity Capture-MS	FSW = 0.3459	Unknown	TRANSMEMBRANE PROTEIN-RELATED
AT2G20290	Predicted Affinity Capture-MS	FSW = 0.0387	Unknown	XIG MOTOR/ PROTEIN BINDING
AT2G37760	Predicted Affinity Capture-MS	FSW = 0.0891	Unknown	ALDO/KETO REDUCTASE FAMILY PROTEIN
AT2G38600	Predicted Affinity Capture-MS	FSW = 0.0198	Unknown	ACID PHOSPHATASE CLASS B FAMILY PROTEIN
AT2G41530	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2355	Unknown	SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS
AT2G43360	Predicted Affinity Capture-MS	FSW = 0.1934	Unknown	BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE
AT2G44065	Predicted Affinity Capture-MS	FSW = 0.0298	Unknown	RIBOSOMAL PROTEIN L2 FAMILY PROTEIN
AT2G45080	Predicted Affinity Capture-Western	FSW = 0.0806	Unknown	CYCP31 (CYCLIN P31) CYCLIN-DEPENDENT PROTEIN KINASE
AT2G47570	Predicted Affinity Capture-MS	FSW = 0.1534	Unknown	60S RIBOSOMAL PROTEIN L18 (RPL18A)
AT2G47760	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0894	Unknown	ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC
AT3G02000	Predicted Affinity Capture-MS	FSW = 0.0974	Unknown	ROXY1 DISULFIDE OXIDOREDUCTASE
AT3G11900	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.2132	Unknown	ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER
AT3G19940	Predicted Affinity Capture-MS Affinity Capture-MS Synthetic Lethality	FSW = 0.1727	Unknown	SUGAR TRANSPORTER PUTATIVE
AT3G23570	Predicted Affinity Capture-MS	FSW = 0.3305	Unknown	DIENELACTONE HYDROLASE FAMILY PROTEIN
AT3G49880	Predicted Affinity Capture-MS	FSW = 0.1401	Unknown	GLYCOSYL HYDROLASE FAMILY PROTEIN 43
AT3G52390	Predicted Affinity Capture-MS	FSW = 0.2550	Unknown	TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN
AT3G53730	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1699	Unknown	HISTONE H4
AT3G53880	Predicted Co-purification	FSW = 0.0331	Unknown	ALDO/KETO REDUCTASE FAMILY PROTEIN
AT3G59410	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1909	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT3G59790	Predicted Affinity Capture-MS	FSW = 0.0484	Unknown	ATMPK10 MAP KINASE/ KINASE
AT3G61740	Predicted Affinity Capture-MS	FSW = 0.0033	Unknown	SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G09200	Predicted Affinity Capture-MS	FSW = 0.0299	Unknown	SPLA/RYANODINE RECEPTOR (SPRY) DOMAIN-CONTAINING PROTEIN
AT4G11410	Predicted Affinity Capture-MS	FSW = 0.0109	Unknown	SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT4G29910	Predicted Affinity Capture-MS	FSW = 0.0477	Unknown	ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING
AT4G36070	Predicted Affinity Capture-MS	FSW = 0.0200	Unknown	CPK18 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G06420	Predicted two hybrid Affinity Capture-MS Synthetic Lethality two hybrid Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS	FSW = 0.4321	Unknown	ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT5G16750	Predicted Affinity Capture-Western Affinity Capture-MS	FSW = 0.1755	Unknown	TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING
AT5G17000	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3540	Unknown	NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G19150	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.1564	Unknown	CARBOHYDRATE KINASE FAMILY
AT5G46150	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3796	Unknown	LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT5G67380	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.2172	Unknown	CKA1 (CASEIN KINASE ALPHA 1) KINASE
AT2G19220	Predicted Synthetic Lethality	FSW = 0.0077	Unknown	UNKNOWN PROTEIN
AT2G19910	Predicted Affinity Capture-MS	FSW = 0.3815	Unknown	RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN
AT2G27340	Predicted Synthetic Lethality	FSW = 0.0356	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK)
AT2G37540	Predicted Affinity Capture-MS	FSW = 0.2909	Unknown	SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT3G03590	Predicted Affinity Capture-Western	FSW = 0.1659	Unknown	SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT3G05960	Predicted Affinity Capture-MS	FSW = 0.2561	Unknown	STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G08700	Predicted Synthetic Lethality Phylogenetic profile method Co-expression	FSW = 0.1520	Unknown	UBC12 (UBIQUITIN-CONJUGATING ENZYME 12) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT3G14090	Predicted Synthetic Lethality	FSW = 0.0074	Unknown	ATEXO70D3 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN D3) PROTEIN BINDING
AT3G55280	Predicted Affinity Capture-Western	FSW = 0.0177	Unknown	RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G04695	Predicted Synthetic Lethality	FSW = 0.0099	Unknown	CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT4G11330	Predicted Affinity Capture-MS	FSW = 0.1433	Unknown	ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE
AT4G26510	Predicted Synthetic Lethality	FSW = 0.0141	Unknown	ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE
AT4G36800	Predicted Affinity Capture-MS	FSW = 0.2832	Unknown	RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE
AT4G37490	Predicted Synthetic Lethality	FSW = 0.0036	Unknown	CYCB11 (CYCLIN B11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT4G37980	Predicted Synthetic Lethality	FSW = 0.0131	Unknown	ELI3-1 (ELICITOR-ACTIVATED GENE 3-1) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT4G39330	Predicted Affinity Capture-MS	FSW = 0.3351	Unknown	CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT5G19820	Predicted Affinity Capture-MS	FSW = 0.2101	Unknown	EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G37850	Predicted Affinity Capture-MS	FSW = 0.2539	Unknown	SOS4 (SALT OVERLY SENSITIVE 4) KINASE/ PYRIDOXAL KINASE
AT5G46280	Predicted Synthetic Lethality	FSW = 0.0066	Unknown	DNA REPLICATION LICENSING FACTOR PUTATIVE
AT5G53940	Predicted Synthetic Lethality	FSW = 0.0077	Unknown	YIPPEE FAMILY PROTEIN
AT5G54200	Predicted Affinity Capture-MS	FSW = 0.4137	Unknown	WD-40 REPEAT FAMILY PROTEIN
AT5G41700	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.0792	Unknown	UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G46460	Predicted Shared biological function Phylogenetic profile method Co-expression	FSW = 0.1074	Unknown	UBC13 (UBIQUITIN-CONJUGATING ENZYME 13) UBIQUITIN-PROTEIN LIGASE
AT2G02760	Predicted Shared biological function Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.0447	Unknown	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT5G62540	Predicted Shared biological function Phylogenetic profile method Co-expression	FSW = 0.1336	Unknown	UBC3 (UBIQUITIN-CONJUGATING ENZYME 3) UBIQUITIN-PROTEIN LIGASE
AT5G56150	Predicted Shared biological function Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.1206	Unknown	UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE
AT3G08690	Predicted Shared biological function Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.1490	Unknown	UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) UBIQUITIN-PROTEIN LIGASE
AT3G55380	Predicted Shared biological function Phylogenetic profile method Co-expression	FSW = 0.0980	Unknown	UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE
AT5G25760	Predicted Phylogenetic profile method Co-expression	FSW = 0.1617	Unknown	PEX4 (PEROXIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G53300	Predicted Gene fusion method Phylogenetic profile method	FSW = 0.1396	Unknown	UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE
AT4G27960	Predicted Gene fusion method Phylogenetic profile method	FSW = 0.1132	Unknown	UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE
AT1G78870	Predicted Shared biological function Phylogenetic profile method	FSW = 0.0918	Unknown	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G42990	Predicted Phylogenetic profile method	FSW = 0.1369	Unknown	UBC18 (UBIQUITIN-CONJUGATING ENZYME 18) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT1G14400	Predicted Phylogenetic profile method	FSW = 0.0481	Unknown	UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT2G16740 - ( UBC29 (ubiquitin-conjugating enzyme 29) ubiquitin-protein ligase )

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