Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G28710 - ( H+-transporting two-sector ATPase putative )
78 Proteins interacs with AT3G28710Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78900 | PredictedAffinity Capture-Western | FSW = 0.0616
| Class C:vacuoleplasma membrane | VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G28715 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile method | FSW = 0.3116
| Class C:vacuoleplasma membrane | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT4G02620 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0920
| Class C:vacuoleplasma membrane | VACUOLAR ATPASE SUBUNIT F FAMILY PROTEIN |
AT2G21410 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0712
| Class C:vacuole | VHA-A2 (VACUOLAR PROTON ATPASE A2) ATPASE |
AT1G20260 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0766
| Class C:vacuole | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G62870 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0232
| Class C:vacuole | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G64200 | Predictedtwo hybrid | FSW = 0.0814
| Class C:vacuole | VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G60820 | Predictedtwo hybrid | FSW = 0.0138
| Class C:plasma membrane | PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G39740 | Predictedtwo hybrid | FSW = 0.0044
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT1G71860 | PredictedSynthetic Lethality | FSW = 0.0106
| Class C:plasma membrane | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
AT1G27450 | Predictedtwo hybrid | FSW = 0.0290
| Class C:plasma membrane | APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) ADENINE PHOSPHORIBOSYLTRANSFERASE |
AT3G45780 | PredictedPhenotypic Suppression | FSW = 0.0081
| Class C:plasma membrane | PHOT1 (PHOTOTROPIN 1) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT1G13210 | PredictedAffinity Capture-MS | FSW = 0.0151
| Class C:plasma membrane | ACAL (AUTOINHIBITED CA2+/ATPASE II) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / CALMODULIN BINDING |
AT2G19830 | Predictedtwo hybrid | FSW = 0.0191
| Class C:plasma membrane | SNF72 |
AT2G26300 | Predictedtwo hybrid | FSW = 0.0037
| Class C:plasma membrane | GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1) GTP BINDING / GTPASE/ CHANNEL REGULATOR/ SIGNAL TRANSDUCER |
AT1G03920 | PredictedAffinity Capture-MS | FSW = 0.0094
| Class C:plasma membrane | PROTEIN KINASE PUTATIVE |
AT3G48170 | PredictedPhenotypic Suppression | FSW = 0.0656
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.0529
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT2G44350 | Predictedtwo hybrid | FSW = 0.0133
| Unknown | ATCS ATP BINDING / ATP CITRATE SYNTHASE/ CITRATE (SI)-SYNTHASE |
AT1G51040 | PredictedAffinity Capture-MS | FSW = 0.0460
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT5G15450 | PredictedSynthetic RescuePhenotypic Enhancement | FSW = 0.0456
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G51820 | PredictedPhenotypic Suppression | FSW = 0.0261
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT4G26530 | Predictedtwo hybrid | FSW = 0.0258
| Unknown | FRUCTOSE-BISPHOSPHATE ALDOLASE PUTATIVE |
AT1G15710 | Predictedtwo hybrid | FSW = 0.0488
| Unknown | PREPHENATE DEHYDROGENASE FAMILY PROTEIN |
AT5G14320 | PredictedPhenotypic Enhancement | FSW = 0.0242
| Unknown | 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13) |
AT3G11630 | Predictedsynthetic growth defect | FSW = 0.0618
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT5G14170 | Predictedtwo hybrid | FSW = 0.0068
| Unknown | CHC1 |
AT1G43700 | Predictedtwo hybrid | FSW = 0.0209
| Unknown | VIP1 (VIRE2-INTERACTING PROTEIN 1) PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT1G23800 | Predictedtwo hybrid | FSW = 0.0200
| Unknown | ALDH2B7 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD) |
AT1G71270 | Predictedtwo hybrid | FSW = 0.0183
| Unknown | POK (POKY POLLEN TUBE) |
AT5G02730 | PredictedPhenotypic Suppression | FSW = 0.0182
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G54840 | PredictedPhenotypic Enhancement | FSW = 0.0406
| Unknown | ARA6 GTP BINDING / GTPASE |
AT4G35640 | PredictedAffinity Capture-MS | FSW = 0.0458
| Unknown | ATSERAT32 (SERINE ACETYLTRANSFERASE 32) ACETYLTRANSFERASE/ SERINE O-ACETYLTRANSFERASE |
AT5G48840 | Predictedtwo hybrid | FSW = 0.0262
| Unknown | PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC) PANTOATE-BETA-ALANINE LIGASE/ PROTEIN HOMODIMERIZATION |
AT3G08730 | PredictedAffinity Capture-MSPhenotypic Suppression | FSW = 0.0329
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G05170 | PredictedPhenotypic Suppression | FSW = 0.0351
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT1G79750 | Predictedtwo hybrid | FSW = 0.0175
| Unknown | ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR |
AT2G42120 | Predictedtwo hybrid | FSW = 0.0576
| Unknown | POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT4G17190 | PredictedPhenotypic EnhancementAffinity Capture-MS | FSW = 0.0333
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G52500 | PredictedPhenotypic Suppression | FSW = 0.0462
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT1G78970 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MStwo hybrid | FSW = 0.2155
| Unknown | LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.0399
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.0371
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0260
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT3G03180 | PredictedSynthetic Rescue | FSW = 0.0308
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT3G08650 | PredictedPhenotypic Enhancement | FSW = 0.0496
| Unknown | METAL TRANSPORTER FAMILY PROTEIN |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.0351
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT1G33110 | PredictedPhenotypic Suppression | FSW = 0.0460
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G78290 | PredictedPhenotypic Suppression | FSW = 0.0456
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT2G41530 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0396
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT4G27130 | PredictedPhenotypic Suppression | FSW = 0.0656
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G09630 | PredictedSynthetic RescuePhenotypic Suppression | FSW = 0.0578
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G19820 | PredictedPhenotypic Suppression | FSW = 0.0712
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G60870 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0248
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT3G53510 | PredictedSynthetic Lethality | FSW = 0.0248
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT3G59540 | PredictedPhenotypic Suppression | FSW = 0.0296
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G19600 | PredictedPhenotypic Enhancement | FSW = 0.0125
| Unknown | CYCT14 CYCLIN-DEPENDENT PROTEIN KINASE |
AT5G44830 | PredictedPhenotypic Enhancement | FSW = 0.0391
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT5G49970 | PredictedPhenotypic Enhancement | FSW = 0.0602
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT1G12040 | PredictedAffinity Capture-MS | FSW = 0.0090
| Unknown | LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) HISTIDINE PHOSPHOTRANSFER KINASE/ PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CELL WALL |
AT5G23290 | PredictedSynthetic Lethality | FSW = 0.0207
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT3G22480 | PredictedSynthetic Lethality | FSW = 0.0149
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT1G08780 | PredictedSynthetic Lethality | FSW = 0.0122
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT3G18430 | PredictedSynthetic Lethality | FSW = 0.0422
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT1G02080 | Predictedtwo hybrid | FSW = 0.0039
| Unknown | TRANSCRIPTIONAL REGULATOR-RELATED |
AT5G58240 | Predictedtwo hybrid | FSW = 0.0257
| Unknown | BIS(5-ADENOSYL)-TRIPHOSPHATASE PUTATIVE |
AT5G67290 | Predictedtwo hybrid | FSW = 0.0244
| Unknown | FAD-DEPENDENT OXIDOREDUCTASE FAMILY PROTEIN |
AT5G10050 | Predictedtwo hybrid | FSW = 0.0258
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT4G19110 | Predictedtwo hybrid | FSW = 0.0220
| Unknown | PROTEIN KINASE PUTATIVE |
AT2G22425 | Predictedtwo hybrid | FSW = 0.0047
| Unknown | PEPTIDASE |
AT5G51970 | Predictedtwo hybrid | FSW = 0.0459
| Unknown | SORBITOL DEHYDROGENASE PUTATIVE / L-IDITOL 2-DEHYDROGENASE PUTATIVE |
AT5G26680 | Predictedtwo hybrid | FSW = 0.0133
| Unknown | ENDONUCLEASE PUTATIVE |
AT4G33070 | Predictedtwo hybrid | FSW = 0.0351
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT4G05440 | Predictedtwo hybrid | FSW = 0.0272
| Unknown | EDA35 (EMBRYO SAC DEVELOPMENT ARREST 35) |
AT4G16700 | Predictedtwo hybrid | FSW = 0.0191
| Unknown | PSD1 (PHOSPHATIDYLSERINE DECARBOXYLASE 1) PHOSPHATIDYLSERINE DECARBOXYLASE |
AT1G32270 | Predictedtwo hybrid | FSW = 0.0076
| Unknown | ATSYP24 SNAP RECEPTOR/ PROTEIN BINDING |
AT1G54650 | Predictedtwo hybrid | FSW = 0.0439
| Unknown | METHYLTRANSFERASE |
AT4G08960 | Predictedtwo hybrid | FSW = 0.0157
| Unknown | PHOSPHOTYROSYL PHOSPHATASE ACTIVATOR (PTPA) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454