Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G71270 - ( POK (POKY POLLEN TUBE) )
59 Proteins interacs with AT1G71270Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G31780 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1675
| Class C:golgi | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT5G26240 | PredictedPhenotypic Enhancement | FSW = 0.1219
| Class C:golgi | CLC-D (CHLORIDE CHANNEL D) ANION CHANNEL/ VOLTAGE-GATED CHLORIDE CHANNEL |
AT1G28490 | PredictedAffinity Capture-Western | FSW = 0.0485
| Class C:golgi | SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR |
AT5G18280 | PredictedPhenotypic Enhancement | FSW = 0.1818
| Class C:golgi | ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) ATPASE/ NUCLEOTIDE DIPHOSPHATASE |
AT3G27170 | Predictedinterologs mapping | FSW = 0.0863
| Unknown | CLC-B (CHLORIDE CHANNEL B) ANION CHANNEL/ VOLTAGE-GATED CHLORIDE CHANNEL |
AT1G49240 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0073
| Unknown | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G61790 | PredictedPhenotypic Enhancement | FSW = 0.1067
| Unknown | CALNEXIN 1 (CNX1) |
AT2G44610 | Predictedinteraction prediction | FSW = 0.0929
| Unknown | RAB6A GTP BINDING / PROTEIN BINDING |
AT1G07770 | Predictedtwo hybridtwo hybrid | FSW = 0.0085
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G28715 | Predictedinteraction prediction | FSW = 0.0190
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT3G28710 | Predictedtwo hybrid | FSW = 0.0183
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT4G01320 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0705
| Unknown | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
AT3G08530 | Predictedtwo hybrid | FSW = 0.0070
| Unknown | CLATHRIN HEAVY CHAIN PUTATIVE |
AT1G07420 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0570
| Unknown | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT4G19490 | Predictedinteraction predictionAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.1878
| Unknown | PROTEIN BINDING |
AT1G09180 | Predictedtwo hybrid | FSW = 0.0272
| Unknown | ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1) GTP BINDING |
AT1G09210 | Predictedinterologs mapping | FSW = 0.1394
| Unknown | CALRETICULIN 2 (CRT2) |
AT3G12110 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0114
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G07670 | PredictedPhenotypic Enhancement | FSW = 0.0637
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT5G52640 | PredictedSynthetic Lethality | FSW = 0.0227
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G56330 | Predictedinteraction prediction | FSW = 0.0229
| Unknown | ATSAR1B (SECRETION-ASSOCIATED RAS 1 B) GTP BINDING |
AT2G18510 | Predictedtwo hybridtwo hybrid | FSW = 0.0108
| Unknown | EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT4G26600 | Predictedtwo hybridtwo hybrid | FSW = 0.0019
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT4G20440 | Predictedtwo hybridtwo hybrid | FSW = 0.0066
| Unknown | SMB (SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B) |
AT1G43700 | Predictedtwo hybrid | FSW = 0.0455
| Unknown | VIP1 (VIRE2-INTERACTING PROTEIN 1) PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT2G44950 | Predictedsynthetic growth defect | FSW = 0.0509
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT2G22290 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.1231
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT1G50500 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2622
| Unknown | HIT1 (HEAT-INTOLERANT 1) TRANSPORTER |
AT1G10130 | Predictedinterologs mapping | FSW = 0.0474
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT3G02580 | PredictedSynthetic Lethality | FSW = 0.0650
| Unknown | STE1 (STEROL 1) C-5 STEROL DESATURASE |
AT4G39220 | PredictedPhenotypic Enhancement | FSW = 0.1544
| Unknown | ATRER1A |
AT2G20560 | Predictedtwo hybridtwo hybrid | FSW = 0.0076
| Unknown | DNAJ HEAT SHOCK FAMILY PROTEIN |
AT3G13050 | Predictedtwo hybridtwo hybrid | FSW = 0.0330
| Unknown | TRANSPORTER-RELATED |
AT4G01270 | Predictedtwo hybrid | FSW = 0.0476
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT1G57600 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2439
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
AT1G26450 | PredictedPhenotypic Enhancement | FSW = 0.1766
| Unknown | BETA-13-GLUCANASE-RELATED |
AT1G48760 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1455
| Unknown | DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT2G02760 | Predictedsynthetic growth defect | FSW = 0.0355
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G22530 | PredictedPhenotypic Enhancement | FSW = 0.1136
| Unknown | CATALYTIC/ TRANSFERASE |
AT3G05000 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0559
| Unknown | TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN |
AT3G22480 | Predictedinterologs mappingPhenotypic Suppression | FSW = 0.0366
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G50860 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0818
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT3G58560 | PredictedSynthetic Lethality | FSW = 0.0389
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT5G10260 | PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexAffinity Capture-MS | FSW = 0.0742
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G10960 | PredictedSynthetic Lethality | FSW = 0.0206
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G42000 | PredictedPhenotypic Enhancement | FSW = 0.0723
| Unknown | ORMDL FAMILY PROTEIN |
AT1G09080 | PredictedAffinity Capture-MS | FSW = 0.0427
| Unknown | BIP3 ATP BINDING |
AT3G04080 | Predictedinterologs mapping | FSW = 0.1304
| Unknown | ATAPY1 (APYRASE 1) ATPASE/ CALMODULIN BINDING / NUCLEOTIDE DIPHOSPHATASE |
AT2G18240 | Predictedinterologs mapping | FSW = 0.1381
| Unknown | RER1 PROTEIN PUTATIVE |
AT1G09460 | Predictedinterologs mapping | FSW = 0.1323
| Unknown | GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED |
AT1G55255 | Predictedsynthetic growth defect | FSW = 0.0519
| Unknown | GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED |
AT1G14400 | Predictedsynthetic growth defect | FSW = 0.0317
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT1G15920 | PredictedSynthetic Lethality | FSW = 0.0384
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT1G16560 | Predictedtwo hybrid | FSW = 0.2246
| Unknown | PER1-LIKE FAMILY PROTEIN |
AT5G45010 | Predictedtwo hybrid | FSW = 0.0220
| Unknown | ATDSS1(V) (ARABIDOPSIS DSS1 HOMOLOG ON CHROMOSOME V) |
AT3G07300 | Predictedtwo hybridinteraction prediction | FSW = 0.0059
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
AT1G13160 | Predictedinteraction predictiontwo hybrid | FSW = 0.0051
| Unknown | SDA1 FAMILY PROTEIN |
AT4G38900 | Predictedinteraction prediction | FSW = 0.0345
| Unknown | BZIP PROTEIN |
AT1G71300 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.1148
| Unknown | VPS52/SAC2 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454