AtPIN will be upgraded. Please send your suggestions here

AT4G01320 - ( ATSTE24 endopeptidase/ metalloendopeptidase )

70 Proteins interacs with AT4G01320

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT5G61790	Predicted Phenotypic Enhancement	FSW = 0.0598	Class C: vacuole endoplasmic reticulum	CALNEXIN 1 (CNX1)
AT2G01720	Predicted Phenotypic Enhancement	FSW = 0.0926	Class C: vacuole endoplasmic reticulum	RIBOPHORIN I FAMILY PROTEIN
AT5G66680	Predicted two hybrid interologs mapping Phenotypic Enhancement interaction prediction	FSW = 0.1266	Class C: vacuole endoplasmic reticulum	DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE
AT1G70330	Predicted two hybrid interaction prediction	FSW = 0.0608	Class C: vacuole	ENT1AT (EQUILIBRATIVE NUCLEOTIDE TRANSPORTER 1) NUCLEOSIDE TRANSMEMBRANE TRANSPORTER/ NUCLEOSIDE TRANSMEMBRANE TRANSPORTER AGAINST A CONCENTRATION GRADIENT
AT2G38940	Predicted interaction prediction	FSW = 0.0427	Class C: vacuole	ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT5G12140	Predicted Affinity Capture-MS	FSW = 0.2635	Class C: vacuole	ATCYS1 (A THALIANA CYSTATIN-1) CYSTEINE-TYPE ENDOPEPTIDASE INHIBITOR
AT2G34480	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1336	Class C: vacuole	60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT3G62870	Predicted synthetic growth defect	FSW = 0.0092	Class C: vacuole	60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G79940	Predicted interologs mapping	FSW = 0.1736	Class C: endoplasmic reticulum	ATERDJ2A HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT1G09210	Predicted interologs mapping	FSW = 0.0748	Class C: endoplasmic reticulum	CALRETICULIN 2 (CRT2)
AT4G21180	Predicted Phenotypic Enhancement	FSW = 0.1652	Class C: endoplasmic reticulum	ATERDJ2B HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT1G07670	Predicted Phenotypic Enhancement	FSW = 0.0839	Class C: endoplasmic reticulum	CALCIUM-TRANSPORTING ATPASE
AT1G11680	Predicted two hybrid interaction prediction	FSW = 0.0372	Class C: endoplasmic reticulum	CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE
AT5G23630	Predicted interologs mapping Phenotypic Enhancement	FSW = 0.1972	Class C: endoplasmic reticulum	ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT1G11890	Predicted interologs mapping Phenotypic Enhancement	FSW = 0.0479	Class C: endoplasmic reticulum	SEC22 TRANSPORTER
AT3G55360	Predicted two hybrid interaction prediction	FSW = 0.0449	Class C: endoplasmic reticulum	CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH)
AT2G17520	Predicted interologs mapping Phenotypic Enhancement	FSW = 0.1006	Class C: endoplasmic reticulum	IRE1A ENDORIBONUCLEASE/ KINASE
AT1G10130	Predicted interologs mapping	FSW = 0.0494	Class C: endoplasmic reticulum	ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE
AT1G76400	Predicted interologs mapping	FSW = 0.0426	Class C: endoplasmic reticulum	RIBOPHORIN I FAMILY PROTEIN
AT1G07420	Predicted two hybrid interologs mapping Phenotypic Enhancement interaction prediction	FSW = 0.0991	Unknown	SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE
AT2G30390	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1903	Unknown	FC2 (FERROCHELATASE 2) FERROCHELATASE
AT1G73230	Predicted synthetic growth defect	FSW = 0.0820	Unknown	NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN
AT1G08560	Predicted interologs mapping	FSW = 0.0316	Unknown	SYP111 (SYNTAXIN OF PLANTS 111) SNAP RECEPTOR
AT1G59820	Predicted Phenotypic Enhancement	FSW = 0.0855	Unknown	ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER
AT1G75170	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2029	Unknown	SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT3G03800	Predicted Phenotypic Enhancement	FSW = 0.0487	Unknown	SYP131 (SYNTAXIN OF PLANTS 131) SNAP RECEPTOR
AT3G54700	Predicted two hybrid	FSW = 0.0286	Unknown	CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G13210	Predicted interologs mapping	FSW = 0.0723	Unknown	ACAL (AUTOINHIBITED CA2+/ATPASE II) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / CALMODULIN BINDING
AT4G35020	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1293	Unknown	ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE
AT1G77210	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1968	Unknown	SUGAR TRANSPORTER PUTATIVE
AT4G21680	Predicted Phenotypic Enhancement	FSW = 0.0139	Unknown	PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT4G33090	Predicted Affinity Capture-MS	FSW = 0.1003	Unknown	APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE
AT5G19330	Predicted Phenotypic Enhancement	FSW = 0.0219	Unknown	ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN
AT4G34430	Predicted Affinity Capture-MS	FSW = 0.0436	Unknown	CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT2G47640	Predicted Affinity Capture-MS	FSW = 0.0021	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE
AT2G40290	Predicted Affinity Capture-MS	FSW = 0.0971	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE
AT4G36590	Predicted Affinity Capture-MS	FSW = 0.2387	Unknown	MADS-BOX PROTEIN (AGL40)
AT5G47630	Predicted Affinity Capture-MS	FSW = 0.1006	Unknown	MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING
AT1G71270	Predicted interologs mapping Phenotypic Enhancement	FSW = 0.0705	Unknown	POK (POKY POLLEN TUBE)
AT2G31300	Predicted Synthetic Lethality interaction prediction	FSW = 0.1038	Unknown	ARPC1B (ACTIN-RELATED PROTEIN C1B) ACTIN BINDING / NUCLEOTIDE BINDING
AT2G30910	Predicted Synthetic Lethality	FSW = 0.1125	Unknown	ARPC1A (ACTIN-RELATED PROTEIN C1A) ACTIN BINDING / NUCLEOTIDE BINDING
AT1G08750	Predicted two hybrid interologs mapping Phenotypic Enhancement interaction prediction	FSW = 0.0604	Unknown	GPI-ANCHOR TRANSAMIDASE PUTATIVE
AT1G10600	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2943	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN UBIQUITIN-DEPENDENT PROTEIN CATABOLIC PROCESS LOCATED IN CHLOROPLAST EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S MOV34/MPN/PAD-1 (INTERPROIPR000555) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G161441) HAS 753 BLAST HITS TO 752 PROTEINS IN 167 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 359 FUNGI - 199 PLANTS - 115 VIRUSES - 0 OTHER EUKARYOTES - 80 (SOURCE NCBI BLINK)
AT1G43080	Predicted Affinity Capture-MS synthetic growth defect Phenotypic Enhancement	FSW = 0.2196	Unknown	GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN
AT3G22480	Predicted Synthetic Lethality interologs mapping Phenotypic Enhancement interaction prediction	FSW = 0.0576	Unknown	PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G55380	Predicted Phenotypic Enhancement	FSW = 0.0937	Unknown	UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE
AT1G06080	Predicted interologs mapping Phenotypic Enhancement	FSW = 0.0387	Unknown	ADS1 (DELTA 9 DESATURASE 1) OXIDOREDUCTASE
AT1G08780	Predicted Synthetic Lethality interologs mapping Phenotypic Enhancement interaction prediction	FSW = 0.0410	Unknown	AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G16560	Predicted interologs mapping Phenotypic Enhancement	FSW = 0.1774	Unknown	PER1-LIKE FAMILY PROTEIN
AT1G25260	Predicted co-fractionation Co-fractionation	FSW = 0.0542	Unknown	ACIDIC RIBOSOMAL PROTEIN P0-RELATED
AT1G29990	Predicted Synthetic Lethality interaction prediction	FSW = 0.0297	Unknown	PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT2G22530	Predicted Phenotypic Enhancement	FSW = 0.1464	Unknown	CATALYTIC/ TRANSFERASE
AT2G34980	Predicted two hybrid interaction prediction	FSW = 0.1997	Unknown	SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE
AT2G37550	Predicted interologs mapping Phenotypic Enhancement	FSW = 0.0142	Unknown	AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT2G40190	Predicted two hybrid interaction prediction	FSW = 0.0474	Unknown	GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN
AT2G47760	Predicted interologs mapping Phenotypic Enhancement	FSW = 0.0540	Unknown	ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC
AT3G27000	Predicted Synthetic Lethality interaction prediction	FSW = 0.0349	Unknown	ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G59540	Predicted Phenotypic Enhancement	FSW = 0.0058	Unknown	60S RIBOSOMAL PROTEIN L38 (RPL38B)
AT5G23290	Predicted Synthetic Lethality interaction prediction	FSW = 0.0343	Unknown	PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G49510	Predicted Synthetic Lethality interaction prediction	FSW = 0.0404	Unknown	PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G59440	Predicted Affinity Capture-MS	FSW = 0.1804	Unknown	ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE
AT4G21480	Predicted Affinity Capture-MS	FSW = 0.0108	Unknown	CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT5G02560	Predicted Affinity Capture-MS	FSW = 0.0186	Unknown	HTA12 DNA BINDING
AT5G13010	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.0938	Unknown	EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT5G13060	Predicted interologs mapping	FSW = 0.0267	Unknown	ABAP1 (ARMADILLO BTB ARABIDOPSIS PROTEIN 1) PROTEIN BINDING
AT3G46460	Predicted interologs mapping	FSW = 0.1097	Unknown	UBC13 (UBIQUITIN-CONJUGATING ENZYME 13) UBIQUITIN-PROTEIN LIGASE
AT2G22425	Predicted two hybrid	FSW = 0.0675	Unknown	PEPTIDASE
AT1G20860	Predicted two hybrid	FSW = 0.0371	Unknown	PHOSPHATE TRANSPORTER FAMILY PROTEIN
AT1G02630	Predicted two hybrid	FSW = 0.0232	Unknown	EQUILIBRATIVE NUCLEOSIDE TRANSPORTER PUTATIVE (ENT8)
AT4G40042	Predicted interaction prediction	FSW = 0.0598	Unknown	PEPTIDASE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT4G01320 - ( ATSTE24 endopeptidase/ metalloendopeptidase )

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Downloads

Fasta sequences:

Quick help

FSW

C3

PEP

How to cite