Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G31300 - ( ARPC1B (ACTIN-RELATED PROTEIN C1B) actin binding / nucleotide binding )

29 Proteins interacs with AT2G31300
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G14147

Experimental

FSW = 0.2105

Unknown

ARPC4 PROTEIN BINDING
AT1G19910

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0364

Unknown

AVA-P2 ATPASE/ PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT4G01320

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.1038

Unknown

ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE
AT5G55400

Predicted

Synthetic Lethality

FSW = 0.0794

Unknown

FIMBRIN-LIKE PROTEIN PUTATIVE
AT5G23630

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.1073

Unknown

ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT1G11890

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0585

Unknown

SEC22 TRANSPORTER
AT1G32090

Predicted

Affinity Capture-MS

FSW = 0.0232

Unknown

EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT2G30910

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

FSW = 0.5177

Unknown

ARPC1A (ACTIN-RELATED PROTEIN C1A) ACTIN BINDING / NUCLEOTIDE BINDING
AT3G28730

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0209

Unknown

ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT5G38470

Predicted

Affinity Capture-MS

FSW = 0.0295

Unknown

DNA REPAIR PROTEIN RAD23 PUTATIVE
AT5G56600

Predicted

Synthetic Rescue

FSW = 0.0941

Unknown

PRF3 (PROFILIN 3) ACTIN BINDING
AT1G30825

Predicted

in vitro

in vitro

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1514

Unknown

DIS2 (DISTORTED TRICHOMES 2) STRUCTURAL MOLECULE
AT1G13180

Predicted

Affinity Capture-Western

Co-purification

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

co-fractionation

Co-fractionation

interaction prediction

FSW = 0.2000

Unknown

DIS1 (DISTORTED TRICHOMES 1) ATP BINDING / ACTIN BINDING / PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G60430

Predicted

interaction prediction

in vivo

in vitro

in vitro

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Synthetic Lethality

FSW = 0.1773

Unknown

ARPC3 (ACTIN-RELATED PROTEIN C3) STRUCTURAL MOLECULE
AT3G27000

Predicted

in vitro

in vitro

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

interaction prediction

FSW = 0.2702

Unknown

ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G08780

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0946

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G29990

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0930

Unknown

PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G49490

Predicted

two hybrid

Reconstituted Complex

FSW = 0.1020

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN
AT1G73570

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.2026

Unknown

SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED
AT2G21440

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0165

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G22142

Predicted

Synthetic Lethality

FSW = 0.2000

Unknown

STRUCTURAL CONSTITUENT OF CELL WALL
AT3G22480

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0641

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G56150

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0104

Unknown

EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR
AT4G08500

Predicted

Synthetic Lethality

FSW = 0.0736

Unknown

MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING
AT4G17890

Predicted

Synthetic Lethality

FSW = 0.1000

Unknown

AGD8 (ARF-GAP DOMAIN 8) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT5G26360

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0608

Unknown

CHAPERONIN PUTATIVE
AT5G35700

Predicted

interaction prediction

FSW = 0.0496

Unknown

FIM2 (FIMBRIN-LIKE PROTEIN 2) ACTIN BINDING
AT5G46750

Predicted

interaction prediction

FSW = 0.0474

Unknown

AGD9 (ARF-GAP DOMAIN 9) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT1G54960

Predicted

interaction prediction

FSW = 0.1587

Unknown

ANP2 MAP KINASE KINASE KINASE/ KINASE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454