Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G17890 - ( AGD8 (ARF-GAP DOMAIN 8) ARF GTPase activator/ DNA binding / zinc ion binding )
33 Proteins interacs with AT4G17890Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G62290 | Predictedbiochemical | FSW = 0.0766
| Unknown | ATARFA1E (ADP-RIBOSYLATION FACTOR A1E) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT4G31490 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1500
| Unknown | COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE |
AT2G05630 | Predictedtwo hybrid | FSW = 0.1091
| Unknown | AUTOPHAGY 8D (APG8D) |
AT3G22845 | PredictedPhenotypic Enhancement | FSW = 0.0270
| Unknown | EMP24/GP25L/P24 PROTEIN-RELATED |
AT4G01370 | Predictedbiochemical | FSW = 0.0094
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT5G23010 | PredictedAffinity Capture-MS | FSW = 0.0486
| Unknown | MAM1 (METHYLTHIOALKYLMALATE SYNTHASE 1) 2-ISOPROPYLMALATE SYNTHASE/ METHYLTHIOALKYLMALATE SYNTHASE |
AT1G07940 | Predictedtwo hybrid | FSW = 0.0466
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G23630 | PredictedPhenotypic Enhancement | FSW = 0.0698
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G11890 | Predictedinterologs mapping | FSW = 0.1511
| Unknown | SEC22 TRANSPORTER |
AT5G52640 | PredictedSynthetic Lethality | FSW = 0.0252
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G62020 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1017
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT ALPHA PUTATIVE |
AT2G17520 | Predictedbiochemical | FSW = 0.0628
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
AT5G14170 | Predictedtwo hybrid | FSW = 0.0255
| Unknown | CHC1 |
AT2G31300 | PredictedSynthetic Lethality | FSW = 0.1000
| Unknown | ARPC1B (ACTIN-RELATED PROTEIN C1B) ACTIN BINDING / NUCLEOTIDE BINDING |
AT1G79990 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1855
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT2G24940 | PredictedPhenotypic Enhancement | FSW = 0.0811
| Unknown | ATMAPR2 (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 2) HEME BINDING |
AT2G37550 | Predictedinterologs mappingSynthetic LethalitySynthetic Lethalityinterologs mapping | FSW = 0.0281
| Unknown | AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT3G12180 | PredictedPhenotypic Enhancement | FSW = 0.1752
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G01910 | PredictedPhenotypic Enhancement | FSW = 0.1235
| Unknown | ANION-TRANSPORTING ATPASE PUTATIVE |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0154
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G13680 | PredictedSynthetic Lethality | FSW = 0.0466
| Unknown | CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE |
AT2G32850 | Predictedbiochemical | FSW = 0.0276
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G37840 | Predictedbiochemical | FSW = 0.0219
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G01090 | Predictedbiochemical | FSW = 0.0608
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G22590 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0474
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT4G08500 | Predictedbiochemical | FSW = 0.0664
| Unknown | MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING |
AT4G34450 | PredictedAffinity Capture-MSAffinity Capture-WesternSynthetic LethalityAffinity Capture-MS | FSW = 0.1653
| Unknown | COATOMER GAMMA-2 SUBUNIT PUTATIVE / GAMMA-2 COAT PROTEIN PUTATIVE / GAMMA-2 COP PUTATIVE |
AT5G04540 | Predictedinterologs mapping | FSW = 0.0262
| Unknown | PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE |
AT5G10260 | PredictedSynthetic Lethality | FSW = 0.0574
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.0261
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G52210 | PredictedSynthetic Lethality | FSW = 0.0858
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT5G61980 | Predictedsynthetic growth defect | FSW = 0.0423
| Unknown | AGD1 (ARF-GAP DOMAIN 1) ARF GTPASE ACTIVATOR/ PROTEIN BINDING / ZINC ION BINDING |
AT5G46750 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3470
| Unknown | AGD9 (ARF-GAP DOMAIN 9) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454