Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G22845 - ( emp24/gp25L/p24 protein-related )
32 Proteins interacs with AT3G22845Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G03860 | PredictedAffinity Capture-MS | FSW = 0.0370
| Class C:vacuole | ATPHB2 (PROHIBITIN 2) |
AT5G67500 | PredictedAffinity Capture-MS | FSW = 0.0088
| Class C:vacuole | VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL |
AT2G42740 | PredictedAffinity Capture-MS | FSW = 0.0313
| Class C:vacuole | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G27490 | PredictedPhenotypic Suppression | FSW = 0.0416
| Class C:vacuole | ATCOAE ATP BINDING / DEPHOSPHO-COA KINASE |
AT5G66680 | Predictedtwo hybridinteraction prediction | FSW = 0.0258
| Class C:vacuole | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT1G66580 | PredictedAffinity Capture-MS | FSW = 0.0211
| Class C:vacuole | 60S RIBOSOMAL PROTEIN L10 (RPL10C) |
AT5G59690 | PredictedAffinity Capture-MS | FSW = 0.0284
| Unknown | HISTONE H4 |
AT1G07420 | Predictedtwo hybridinteraction prediction | FSW = 0.0279
| Unknown | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT2G45300 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0154
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT3G12110 | Predictedtwo hybrid | FSW = 0.0075
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G05570 | Predictedinteraction prediction | FSW = 0.0134
| Unknown | CALS1 (CALLOSE SYNTHASE 1) 13-BETA-GLUCAN SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0124
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G13560 | Predictedtwo hybridinteraction prediction | FSW = 0.0435
| Unknown | AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS |
AT3G24350 | PredictedCo-purification | FSW = 0.0326
| Unknown | SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR |
AT1G69460 | PredictedGene fusion method | FSW = 0.0994
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G05710 | PredictedCo-purification | FSW = 0.0317
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT4G01400 | Predictedtwo hybridtwo hybrid | FSW = 0.0910
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S COG4 TRANSPORT (INTERPROIPR013167) PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN (TAIRAT5G461001) HAS 11639 BLAST HITS TO 3936 PROTEINS IN 180 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 206 FUNGI - 141 PLANTS - 11004 VIRUSES - 0 OTHER EUKARYOTES - 286 (SOURCE NCBI BLINK) |
AT1G06080 | PredictedAffinity Capture-MS | FSW = 0.0147
| Unknown | ADS1 (DELTA 9 DESATURASE 1) OXIDOREDUCTASE |
AT1G08880 | PredictedAffinity Capture-MS | FSW = 0.0166
| Unknown | H2AXA DNA BINDING |
AT1G16560 | PredictedPhenotypic Enhancement | FSW = 0.0213
| Unknown | PER1-LIKE FAMILY PROTEIN |
AT1G57620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1041
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT2G13680 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0320
| Unknown | CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE |
AT1G26690 | Predictedtwo hybridinteraction predictionGene fusion methodCo-expression | FSW = 0.0538
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G31470 | Predictedtwo hybridinteraction prediction | FSW = 0.0625
| Unknown | NFD4 (NUCLEAR FUSION DEFECTIVE 4) |
AT2G34980 | Predictedtwo hybridinteraction prediction | FSW = 0.0219
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
AT4G32530 | Predictedtwo hybridinteraction prediction | FSW = 0.0313
| Unknown | VACUOLAR ATP SYNTHASE PUTATIVE / V-ATPASE PUTATIVE |
AT4G15770 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0211
| Unknown | RNA BINDING / PROTEIN BINDING |
AT4G17890 | PredictedPhenotypic Enhancement | FSW = 0.0270
| Unknown | AGD8 (ARF-GAP DOMAIN 8) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT4G24920 | PredictedAffinity Capture-MS | FSW = 0.0588
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 GAMMA SUBUNIT PUTATIVE |
AT4G27640 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0225
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
AT5G20600 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0446
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK) |
AT5G65900 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0266
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454