Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT1G08880 - ( H2AXA DNA binding )

99 Proteins interacs with AT1G08880
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G31700

Predicted

Affinity Capture-MS

FSW = 0.0212

Unknown

RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07660Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1871

Unknown

HISTONE H4
AT2G17360

Predicted

Affinity Capture-MS

FSW = 0.0246

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT2G31610

Predicted

Affinity Capture-MS

FSW = 0.0436

Unknown

40S RIBOSOMAL PROTEIN S3 (RPS3A)
AT3G07680

Predicted

Affinity Capture-MS

FSW = 0.0123

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT3G60840

Predicted

Affinity Capture-MS

FSW = 0.0129

Unknown

MAP65-4 (MICROTUBULE-ASSOCIATED PROTEIN 65-4)
AT3G22845

Predicted

Affinity Capture-MS

FSW = 0.0166

Unknown

EMP24/GP25L/P24 PROTEIN-RELATED
AT5G59690Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1989

Unknown

HISTONE H4
AT1G07790

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2124

Unknown

HTB1 DNA BINDING
AT5G22330

Predicted

Affinity Capture-Western

Phenotypic Suppression

FSW = 0.0991

Unknown

RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING
AT1G03475

Predicted

Affinity Capture-MS

FSW = 0.0454

Unknown

LIN2 (LESION INITIATION 2) COPROPORPHYRINOGEN OXIDASE
AT2G45300

Predicted

Phenotypic Suppression

FSW = 0.0254

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT3G10050

Predicted

Phenotypic Enhancement

FSW = 0.0039

Unknown

OMR1 (L-O-METHYLTHREONINE RESISTANT 1) L-THREONINE AMMONIA-LYASE
AT3G56570

Predicted

Phenotypic Enhancement

FSW = 0.0100

Unknown

SET DOMAIN-CONTAINING PROTEIN
AT5G17770

Predicted

Affinity Capture-MS

FSW = 0.0094

Unknown

ATCBR (ARABIDOPSIS THALIANA NADHCYTOCHROME B5 REDUCTASE 1) CYTOCHROME-B5 REDUCTASE
AT2G42500

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0176

Unknown

PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G26110

Predicted

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0730

Unknown

NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING
AT1G10430

Predicted

Affinity Capture-MS

FSW = 0.0147

Unknown

PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G19480

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0686

Unknown

NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING
AT3G53870

Predicted

Affinity Capture-MS

FSW = 0.0209

Unknown

40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT1G16970

Predicted

Affinity Capture-MS

FSW = 0.0566

Unknown

KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING
AT4G26720

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0437

Unknown

PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G19310

Predicted

Affinity Capture-MS

FSW = 0.0725

Unknown

HOMEOTIC GENE REGULATOR PUTATIVE
AT3G54610

Predicted

biochemical

Co-expression

FSW = 0.2067

Unknown

GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT4G25630

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0192

Unknown

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT1G54690

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1308

Unknown

GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX) DNA BINDING
AT3G13445

Predicted

Affinity Capture-MS

FSW = 0.0533

Unknown

TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT2G03870

Predicted

Phenotypic Suppression

FSW = 0.0357

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT3G54280

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1146

Unknown

RGD3 (ROOT GROWTH DEFECTIVE 3) ATP BINDING / DNA BINDING / BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G06010

Predicted

Affinity Capture-MS

FSW = 0.0583

Unknown

ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT5G59870

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0367

Unknown

HTA6 DNA BINDING
AT5G08180

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0221

Unknown

RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT4G10710

Predicted

Affinity Capture-MS

FSW = 0.1110

Unknown

SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT4G10670

Predicted

Affinity Capture-MS

FSW = 0.0880

Unknown

GTC2
AT5G54910

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0269

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT3G01770

Predicted

Affinity Capture-MS

FSW = 0.0218

Unknown

ATBET10 (ARABIDOPSIS THALIANA BROMODOMAIN AND EXTRATERMINAL DOMAIN PROTEIN 10) DNA BINDING
AT1G51060

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1129

Unknown

HTA10 DNA BINDING
AT5G54640

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1308

Unknown

RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5) DNA BINDING
AT3G13920

Predicted

Affinity Capture-MS

FSW = 0.0072

Unknown

EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT3G57300

Predicted

Affinity Capture-MS

FSW = 0.1186

Unknown

INO80 (INO80 ORTHOLOG) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G36170Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0036

Unknown

UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A)
AT1G07370

Predicted

Phenotypic Suppression

FSW = 0.0551

Unknown

PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT2G37470

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0994

Unknown

HISTONE H2B PUTATIVE
AT1G55520

Predicted

Affinity Capture-MS

FSW = 0.0706

Unknown

TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT1G14690

Predicted

Affinity Capture-MS

FSW = 0.0237

Unknown

MAP65-7 (MICROTUBULE-ASSOCIATED PROTEIN 65-7)
AT3G23890

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0727

Unknown

TOPII (TOPOISOMERASE II) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ DNA TOPOISOMERASE/ DNA-DEPENDENT ATPASE
AT3G28730

Predicted

Affinity Capture-MS

FSW = 0.1156

Unknown

ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT5G63860

Predicted

Affinity Capture-MS

FSW = 0.0638

Unknown

UVR8 (UVB-RESISTANCE 8) CHROMATIN BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT2G37560

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0316

Unknown

ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING
AT1G08260

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0221

Unknown

TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT1G15440

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0164

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G15780

Predicted

Affinity Capture-MS

FSW = 0.0189

Unknown

UNKNOWN PROTEIN
AT1G26170Predicted

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1143

Unknown

BINDING / PROTEIN TRANSPORTER
AT1G31660

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0432

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G43860

Predicted

Affinity Capture-MS

FSW = 0.0071

Unknown

TRANSCRIPTION FACTOR
AT1G52740

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1928

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G54390

Predicted

Affinity Capture-MS

FSW = 0.0334

Unknown

PHD FINGER PROTEIN-RELATED
AT1G59890

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0327

Unknown

SNL5 (SIN3-LIKE 5)
AT2G06040

Predicted

Affinity Capture-MS

FSW = 0.0060

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 17 PLANT STRUCTURES EXPRESSED DURING 10 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LEUCINE-RICH REPEAT CYSTEINE-CONTAINING SUBTYPE (INTERPROIPR006553) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G219001) HAS 3642 BLAST HITS TO 1885 PROTEINS IN 175 SPECIES ARCHAE - 0 BACTERIA - 109 METAZOA - 2066 FUNGI - 492 PLANTS - 697 VIRUSES - 0 OTHER EUKARYOTES - 278 (SOURCE NCBI BLINK)
AT2G16950

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0183

Unknown

TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER
AT3G06670

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0826

Unknown

BINDING
AT3G12380

Predicted

Affinity Capture-MS

FSW = 0.0324

Unknown

ATARP5 (ACTIN-RELATED PROTEIN 5) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G46320Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1087

Unknown

HISTONE H4
AT3G49470

Predicted

Affinity Capture-MS

FSW = 0.0166

Unknown

NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)
AT4G22140

Predicted

Phenotypic Suppression

FSW = 0.0598

Unknown

DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G22540

Predicted

Affinity Capture-MS

FSW = 0.0092

Unknown

ORP2A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A) OXYSTEROL BINDING / PHOSPHOINOSITIDE BINDING
AT5G09740

Predicted

biochemical

Affinity Capture-MS

FSW = 0.0731

Unknown

HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G10270

Predicted

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0350

Unknown

CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G10390Predicted

Affinity Capture-MS

FSW = 0.1568

Unknown

HISTONE H3
AT5G10790

Predicted

Affinity Capture-MS

FSW = 0.0395

Unknown

UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING
AT5G22010

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0527

Unknown

ATRFC1 (REPLICATION FACTOR C 1) ATP BINDING / DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G41340

Predicted

Affinity Capture-MS

FSW = 0.0256

Unknown

UBC4 (UBIQUITIN CONJUGATING ENZYME 4) UBIQUITIN-PROTEIN LIGASE
AT5G56740

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0918

Unknown

HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT5G63670

Predicted

Phenotypic Suppression

FSW = 0.0849

Unknown

SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT1G49760

Predicted

Affinity Capture-MS

FSW = 0.0143

Unknown

PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G63160

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0300

Unknown

REPLICATION FACTOR C 40 KDA PUTATIVE
AT1G77470

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0495

Unknown

REPLICATION FACTOR C 36 KDA PUTATIVE
AT2G23070

Predicted

Affinity Capture-MS

FSW = 0.0712

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT4G32720

Predicted

Affinity Capture-MS

FSW = 0.0166

Unknown

ATLA1 (ARABIDOPSIS THALIANA LA PROTEIN 1) RNA BINDING
AT4G36080Predicted

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0991

Unknown

FAT DOMAIN-CONTAINING PROTEIN / PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN
AT5G10400Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1753

Unknown

HISTONE H3
AT5G40530

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0056

Unknown

EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S METHYLTRANSFERASE-RELATED (INTERPROIPR007823) HAS 293 BLAST HITS TO 293 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 93 FUNGI - 88 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 90 (SOURCE NCBI BLINK)
AT5G45140

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0162

Unknown

NRPC2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING
AT4G15475

Predicted

Affinity Capture-MS

FSW = 0.0044

Unknown

F-BOX FAMILY PROTEIN (FBL4)
AT3G07120

Predicted

Affinity Capture-MS

FSW = 0.0309

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT2G22425

Predicted

Affinity Capture-MS

FSW = 0.0140

Unknown

PEPTIDASE
AT1G63800

Predicted

Affinity Capture-MS

FSW = 0.0105

Unknown

UBC5 (UBIQUITIN-CONJUGATING ENZYME 5) UBIQUITIN-PROTEIN LIGASE
AT1G33040

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0116

Unknown

NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5)
AT1G13170

Predicted

Affinity Capture-MS

FSW = 0.0104

Unknown

ORP1D (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1D) OXYSTEROL BINDING
AT1G09200Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1392

Unknown

HISTONE H3
AT2G23080

Predicted

Affinity Capture-MS

FSW = 0.0525

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT1G09080

Predicted

Affinity Capture-MS

FSW = 0.0176

Unknown

BIP3 ATP BINDING
AT1G10450

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0316

Unknown

SNL6 (SIN3-LIKE 6)
AT2G17930

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0866

Unknown

BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT1G22760

Predicted

Affinity Capture-MS

FSW = 0.0140

Unknown

PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G79880

Predicted

Affinity Capture-MS

FSW = 0.0152

Unknown

LA DOMAIN-CONTAINING PROTEIN
AT1G24190

Predicted

interaction prediction

FSW = 0.0134

Unknown

SNL3 (SIN3-LIKE 3) TRANSCRIPTION REPRESSOR
AT4G27230

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0916

Unknown

HTA2 (HISTONE H2A) DNA BINDING
AT3G20670

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1481

Unknown

HTA13 DNA BINDING

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454