Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G26720 - ( PPX1 (PROTEIN PHOSPHATASE X 1) protein serine/threonine phosphatase )
58 Proteins interacs with AT4G26720Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G13440 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0363
| Class C:nucleuscytosol | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT5G67630 | PredictedPhenotypic Suppression | FSW = 0.0124
| Class C:nucleus | DNA HELICASE PUTATIVE |
AT1G07790 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0164
| Class C:nucleus | HTB1 DNA BINDING |
AT5G67270 | PredictedPhenotypic Enhancement | FSW = 0.1295
| Class C:nucleus | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT2G43810 | PredictedPhenotypic Enhancement | FSW = 0.1072
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT2G47620 | PredictedPhenotypic Suppression | FSW = 0.0450
| Class C:nucleus | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT2G24490 | PredictedPhenotypic Suppression | FSW = 0.1004
| Class C:nucleus | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.0242
| Class C:nucleus | HISTONE H2B PUTATIVE |
AT4G08350 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0226
| Class C:nucleus | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT2G34210 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0222
| Class C:nucleus | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0167
| Class C:cytosol | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G16300 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0276
| Class C:cytosol | GAPCP-2 NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT3G18140 | PredictedGene fusion method | FSW = 0.0355
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G02890 | PredictedGene fusion method | FSW = 0.0391
| Unknown | UBQ14 PROTEIN BINDING |
AT3G58500 | PredictedPhylogenetic profile method | FSW = 0.1471
| Unknown | PP2A-3 (PROTEIN PHOSPHATASE 2A-3) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G19980 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0489
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G11870 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0192
| Unknown | SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE |
AT2G45300 | PredictedPhenotypic Enhancement | FSW = 0.0329
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT1G10430 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1127
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G42500 | PredictedPhylogenetic profile method | FSW = 0.1330
| Unknown | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G20890 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0492
| Unknown | CHAPERONIN PUTATIVE |
AT1G59830 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1729
| Unknown | PP2A-1 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G35940 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1869
| Unknown | PP2A-1 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G34270 | Predictedtwo hybridtwo hybridinteraction prediction | FSW = 0.1528
| Unknown | TIP41-LIKE FAMILY PROTEIN |
AT2G31970 | PredictedSynthetic Lethality | FSW = 0.1045
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G40820 | PredictedPhenotypic Suppression | FSW = 0.1042
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT3G20050 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0479
| Unknown | ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT5G20850 | PredictedSynthetic Lethality | FSW = 0.1091
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G69960 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2070
| Unknown | PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G66130 | PredictedPhenotypic Suppression | FSW = 0.1730
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT5G54260 | PredictedSynthetic Lethality | FSW = 0.1402
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G04730 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1320
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G07705 | PredictedPhenotypic Enhancement | FSW = 0.0079
| Unknown | TRANSCRIPTION REGULATOR |
AT1G08880 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0437
| Unknown | H2AXA DNA BINDING |
AT1G29150 | PredictedPhenotypic Enhancement | FSW = 0.0371
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT1G66740 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1039
| Unknown | SGA2 |
AT2G27970 | PredictedPhenotypic Enhancement | FSW = 0.0303
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G44580 | PredictedSynthetic Lethality | FSW = 0.1447
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G02820 | PredictedSynthetic Lethality | FSW = 0.1698
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT3G06670 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction prediction | FSW = 0.4527
| Unknown | BINDING |
AT1G49540 | PredictedPhenotypic Suppression | FSW = 0.0371
| Unknown | NUCLEOTIDE BINDING |
AT1G60620 | PredictedPhenotypic Suppression | FSW = 0.0382
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G67190 | Predictedsynthetic growth defect | FSW = 0.1530
| Unknown | F-BOX FAMILY PROTEIN |
AT3G22590 | PredictedPhenotypic Enhancement | FSW = 0.0737
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT3G42660 | PredictedPhenotypic Enhancement | FSW = 0.1928
| Unknown | NUCLEOTIDE BINDING |
AT4G25120 | Predictedtwo hybrid | FSW = 0.1161
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT5G23290 | PredictedPhenotypic Suppression | FSW = 0.0477
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G41880 | PredictedPhenotypic Enhancement | FSW = 0.0455
| Unknown | POLA3 DNA PRIMASE |
AT5G45600 | PredictedPhenotypic Suppression | FSW = 0.1253
| Unknown | GAS41 PROTEIN BINDING |
AT5G53000 | PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.1765
| Unknown | TAP46 (2A PHOSPHATASE ASSOCIATED PROTEIN OF 46 KD) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT5G26360 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0332
| Unknown | CHAPERONIN PUTATIVE |
AT5G26680 | PredictedSynthetic Lethality | FSW = 0.1095
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G63670 | PredictedAffinity Capture-MS | FSW = 0.0886
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT5G08565 | PredictedAffinity Capture-MS | FSW = 0.0452
| Unknown | POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT1G50370 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0960
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT5G55260 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2703
| Unknown | PPX2 (PROTEIN PHOSPHATASE X 2) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G29400 | PredictedPhylogenetic profile method | FSW = 0.0211
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G59160 | PredictedPhylogenetic profile method | FSW = 0.0410
| Unknown | TOPP2 PROTEIN SERINE/THREONINE PHOSPHATASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454