Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G29150 - ( ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) )
94 Proteins interacs with AT1G29150Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G05530 | ExperimentalAffinity Capture-Western | FSW = 0.3570
| Unknown | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING |
AT2G25490 | Experimentalbiochemical | FSW = 0.1588
| Unknown | EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G13550 | ExperimentalAffinity Capture-Western | FSW = 0.0138
| Unknown | FUS9 (FUSCA 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G61140 | Experimentaltwo hybrid | FSW = 0.0357
| Unknown | FUS6 (FUSCA 6) |
AT5G09590 | PredictedPhenotypic Enhancement | FSW = 0.0133
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT3G51260 | PredictedAffinity Capture-MS | FSW = 0.1615
| Unknown | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G22630 | PredictedAffinity Capture-MSCo-expression | FSW = 0.2173
| Unknown | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G22110 | PredictedPhenotypic Enhancement | FSW = 0.0862
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G14800 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2087
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G01370 | PredictedPhenotypic Suppression | FSW = 0.0346
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT3G12780 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0506
| Unknown | PGK1 (PHOSPHOGLYCERATE KINASE 1) PHOSPHOGLYCERATE KINASE |
AT5G59690 | PredictedPhenotypic Enhancement | FSW = 0.0732
| Unknown | HISTONE H4 |
AT5G43530 | PredictedPhenotypic Enhancement | FSW = 0.0585
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT2G39290 | PredictedAffinity Capture-MS | FSW = 0.0109
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT1G56190 | PredictedAffinity Capture-MS | FSW = 0.0278
| Unknown | PHOSPHOGLYCERATE KINASE PUTATIVE |
AT5G06290 | Predictedbiochemical | FSW = 0.0067
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT1G22450 | Predictedtwo hybridtwo hybrid | FSW = 0.0262
| Unknown | COX6B (CYTOCHROME C OXIDASE 6B) CYTOCHROME-C OXIDASE |
AT5G58230 | PredictedPhenotypic Enhancement | FSW = 0.0360
| Unknown | MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING |
AT1G45000 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3335
| Unknown | 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE |
AT1G75990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSCo-purification | FSW = 0.3308
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
AT1G20200 | PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationinteraction predictionGene neighbors methodCo-expression | FSW = 0.3570
| Unknown | EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR |
AT1G04810 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3547
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT2G20580 | PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2618
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT1G70490 | PredictedAffinity Capture-MSsynthetic growth defectAffinity Capture-MS | FSW = 0.0169
| Unknown | ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT1G53750 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3116
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT5G19990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2148
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT2G20140 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3286
| Unknown | 26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE |
AT4G24820 | PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3720
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
AT1G09100 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3307
| Unknown | RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING |
AT1G29260 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0127
| Unknown | PEX7 PEROXISOME MATRIX TARGETING SIGNAL-2 BINDING / PROTEIN BINDING |
AT2G44680 | PredictedPhenotypic Suppression | FSW = 0.0293
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT4G26720 | PredictedPhenotypic Enhancement | FSW = 0.0371
| Unknown | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G19120 | PredictedPhenotypic Enhancement | FSW = 0.0496
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT3G54280 | PredictedAffinity Capture-MS | FSW = 0.0129
| Unknown | RGD3 (ROOT GROWTH DEFECTIVE 3) ATP BINDING / DNA BINDING / BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G65470 | PredictedPhenotypic Enhancement | FSW = 0.0662
| Unknown | FAS1 (FASCIATA 1) HISTONE BINDING |
AT1G03330 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0161
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE |
AT3G60510 | PredictedPhenotypic Enhancementsynthetic growth defectAffinity Capture-MSPhenotypic Enhancementsynthetic growth defectSynthetic Lethalityinterologs mapping | FSW = 0.0548
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
AT1G22200 | PredictedAffinity Capture-MS | FSW = 0.0231
| Unknown | UNKNOWN PROTEIN |
AT1G16190 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1908
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT5G42970 | Predictedtwo hybridtwo hybrid | FSW = 0.0238
| Unknown | COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) PROTEIN BINDING |
AT5G19910 | PredictedPhenotypic Suppression | FSW = 0.1032
| Unknown | SOH1 FAMILY PROTEIN |
AT5G58290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3458
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT2G22310 | PredictedPhenotypic Suppression | FSW = 0.0122
| Unknown | ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4) UBIQUITIN-SPECIFIC PROTEASE |
AT5G54260 | PredictedPhenotypic Enhancement | FSW = 0.0794
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G77140 | PredictedAffinity Capture-MS | FSW = 0.0649
| Unknown | VPS45 (VACUOLAR PROTEIN SORTING 45) PROTEIN TRANSPORTER |
AT5G38470 | PredictedAffinity Capture-MS | FSW = 0.1346
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT1G19730 | PredictedAffinity Capture-MS | FSW = 0.0204
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0181
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT5G57815 | Predictedtwo hybrid | FSW = 0.0108
| Unknown | CYTOCHROME C OXIDASE SUBUNIT 6B PUTATIVE |
AT4G19006 | PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3750
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G45620 | PredictedAffinity Capture-MS | FSW = 0.0726
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT1G04730 | PredictedPhenotypic Enhancement | FSW = 0.1139
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G23260 | PredictedPhenotypic Enhancement | FSW = 0.0663
| Unknown | MMZ1 (MMS ZWEI HOMOLOGUE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G29990 | PredictedPhenotypic Suppression | FSW = 0.1151
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G59890 | PredictedPhenotypic Enhancement | FSW = 0.1043
| Unknown | SNL5 (SIN3-LIKE 5) |
AT1G64520 | PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3431
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT1G80410 | PredictedAffinity Capture-MS | FSW = 0.1195
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT3G06470 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-Western | FSW = 0.0353
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G06670 | PredictedPhenotypic Enhancement | FSW = 0.0170
| Unknown | BINDING |
AT3G11270 | PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3699
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
AT3G13970 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0912
| Unknown | APG12B (AUTOPHAGY 12 B) |
AT3G18850 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MStwo hybridAffinity Capture-MStwo hybrid | FSW = 0.0193
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G18860 | PredictedPhenotypic Suppression | FSW = 0.0921
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G21060 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1207
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G22480 | PredictedPhenotypic Suppression | FSW = 0.0911
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G42660 | PredictedPhenotypic Enhancement | FSW = 0.1188
| Unknown | NUCLEOTIDE BINDING |
AT3G54380 | PredictedPhenotypic Suppression | FSW = 0.0751
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT4G27180 | PredictedPhenotypic Enhancement | FSW = 0.0946
| Unknown | ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR |
AT4G29040 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3192
| Unknown | RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE |
AT4G38630 | PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Enhancementinteraction predictionCo-expression | FSW = 0.2806
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G01430 | PredictedPhenotypic Enhancement | FSW = 0.0221
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G09900 | Predictedtwo hybridtwo hybridCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3880
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT5G23290 | PredictedPhenotypic Suppression | FSW = 0.0903
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G23540 | PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3813
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT5G26110 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0324
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN KINASE |
AT5G44750 | PredictedPhenotypic Suppression | FSW = 0.0087
| Unknown | REV1 DNA-DIRECTED DNA POLYMERASE |
AT5G48120 | PredictedPhenotypic Suppression | FSW = 0.1010
| Unknown | BINDING |
AT5G49510 | PredictedPhenotypic Suppression | FSW = 0.0975
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G61150 | PredictedPhenotypic Suppression | FSW = 0.0639
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
AT5G65180 | PredictedPhenotypic Enhancement | FSW = 0.0363
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK) |
AT1G51710 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2711
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT2G03430 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3205
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT2G32730 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MS | FSW = 0.2706
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT2G43190 | PredictedAffinity Capture-MS | FSW = 0.0104
| Unknown | RIBONUCLEASE P FAMILY PROTEIN |
AT2G44580 | PredictedPhenotypic Enhancement | FSW = 0.0994
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT4G36070 | PredictedAffinity Capture-MS | FSW = 0.0124
| Unknown | CPK18 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G10400 | PredictedPhenotypic Enhancement | FSW = 0.0659
| Unknown | HISTONE H3 |
AT5G15540 | PredictedAffinity Capture-MS | FSW = 0.0087
| Unknown | EMB2773 (EMBRYO DEFECTIVE 2773) BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G37530 | PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | THIF FAMILY PROTEIN |
AT5G43010 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3020
| Unknown | RPT4A ATPASE |
AT5G66100 | PredictedPhenotypic Enhancement | FSW = 0.0571
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
AT5G67320 | PredictedPhenotypic Suppression | FSW = 0.0656
| Unknown | HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15) |
AT1G64750 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2514
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
AT1G54210 | PredictedAffinity Capture-MS | FSW = 0.1038
| Unknown | ATG12A (AUTOPHAGY 12 A) PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454