Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G19730 - ( ATTRX4 oxidoreductase acting on sulfur group of donors disulfide as acceptor )
63 Proteins interacs with AT1G19730Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G17360 | PredictedAffinity Capture-MS | FSW = 0.0307
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT5G09590 | PredictedPhenotypic Suppression | FSW = 0.0419
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT3G08710 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0074
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT4G36750 | PredictedAffinity Capture-MS | FSW = 0.0181
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
AT3G62870 | Predictedtwo hybrid | FSW = 0.0393
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G55630 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternCo-purificationco-fractionationCo-fractionation | FSW = 0.1931
| Unknown | ATKCO1 CALCIUM-ACTIVATED POTASSIUM CHANNEL/ ION CHANNEL/ OUTWARD RECTIFIER POTASSIUM CHANNEL |
AT3G26590 | Predictedbiochemical | FSW = 0.0168
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT3G59280 | Predictedtwo hybrid | FSW = 0.1009
| Unknown | TXR1 (THAXTOMIN A RESISTANT 1) |
AT5G42980 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0174
| Unknown | ATTRX3 (THIOREDOXIN 3) OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT1G77750 | PredictedAffinity Capture-WesternPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0763
| Unknown | 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST PUTATIVE |
AT1G11860 | PredictedAffinity Capture-MS | FSW = 0.0186
| Unknown | AMINOMETHYLTRANSFERASE PUTATIVE |
AT3G56160 | PredictedPhenotypic Enhancement | FSW = 0.1486
| Unknown | BILE ACIDSODIUM SYMPORTER |
AT1G45145 | PredictedPhylogenetic profile method | FSW = 0.0807
| Unknown | ATTRX5 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT1G71860 | PredictedColocalization | FSW = 0.0274
| Unknown | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
AT1G27450 | Predictedtwo hybrid | FSW = 0.0986
| Unknown | APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) ADENINE PHOSPHORIBOSYLTRANSFERASE |
AT1G75170 | PredictedPhenotypic Suppression | FSW = 0.0205
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT1G53750 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0633
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT2G36380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1613
| Unknown | PDR6 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT4G14350 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.1719
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G24170 | PredictedSynthetic Rescue | FSW = 0.0161
| Unknown | ATGR1 (GLUTATHIONE-DISULFIDE REDUCTASE) FAD BINDING / NADP OR NADPH BINDING / GLUTATHIONE-DISULFIDE REDUCTASE/ OXIDOREDUCTASE |
AT4G00520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninterologs mapping | FSW = 0.0925
| Unknown | ACYL-COA THIOESTERASE FAMILY PROTEIN |
AT1G29960 | PredictedAffinity Capture-MS | FSW = 0.1185
| Unknown | PEPTIDASE/ SERINE-TYPE PEPTIDASE |
AT4G29390 | PredictedAffinity Capture-MS | FSW = 0.0118
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30B) |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0229
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G75560 | PredictedAffinity Capture-MS | FSW = 0.0483
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT1G79020 | PredictedAffinity Capture-MS | FSW = 0.0134
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT4G33710 | PredictedReconstituted Complex | FSW = 0.0242
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G02730 | PredictedPhenotypic Suppression | FSW = 0.0557
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G35640 | PredictedAffinity Capture-MS | FSW = 0.0105
| Unknown | ATSERAT32 (SERINE ACETYLTRANSFERASE 32) ACETYLTRANSFERASE/ SERINE O-ACETYLTRANSFERASE |
AT1G18100 | PredictedAffinity Capture-MSAffinity Capture-MSPhenotypic EnhancementAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic RescueAffinity Capture-WesternAffinity Capture-Westernco-fractionationCo-fractionationSynthetic RescuePhenotypic Enhancement | FSW = 0.1218
| Unknown | E12A11 PHOSPHATIDYLETHANOLAMINE BINDING |
AT3G51030 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0941
| Unknown | ATTRX1 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT1G05180 | PredictedPhenotypic Enhancement | FSW = 0.1293
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT3G54820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complexco-fractionationCo-fractionationinterologs mapping | FSW = 0.0854
| Unknown | PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) WATER CHANNEL |
AT1G77990 | PredictedPhenotypic Enhancement | FSW = 0.0716
| Unknown | AST56 SULFATE TRANSMEMBRANE TRANSPORTER |
AT1G10980 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1501
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN VACUOLE EXPRESSED IN 8 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G616701) HAS 482 BLAST HITS TO 481 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 255 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK) |
AT1G13580 | PredictedAffinity Capture-Western | FSW = 0.0364
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G01930 | PredictedAffinity Capture-MS | FSW = 0.0149
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT1G66590 | PredictedPhenotypic Enhancementtwo hybrid | FSW = 0.0708
| Unknown | COX19 FAMILY PROTEIN |
AT1G75380 | Predictedinterologs mapping | FSW = 0.0823
| Unknown | WOUND-RESPONSIVE PROTEIN-RELATED |
AT1G80500 | Predictedinterologs mapping | FSW = 0.0418
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK) |
AT2G46710 | PredictedReconstituted Complex | FSW = 0.0478
| Unknown | RAC GTPASE ACTIVATING PROTEIN PUTATIVE |
AT3G11240 | PredictedPhenotypic Enhancement | FSW = 0.0343
| Unknown | ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE |
AT3G12200 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0239
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G62770 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0073
| Unknown | ATATG18A |
AT4G10130 | PredictedPhenotypic Enhancement | FSW = 0.0708
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT4G14000 | PredictedPhenotypic Enhancement | FSW = 0.0438
| Unknown | UNKNOWN PROTEIN |
AT4G16360 | PredictedAffinity Capture-MS | FSW = 0.0185
| Unknown | AMP-ACTIVATED PROTEIN KINASE |
AT4G16370 | PredictedAffinity Capture-MS | FSW = 0.0135
| Unknown | ATOPT3 (OLIGOPEPTIDE TRANSPORTER) OLIGOPEPTIDE TRANSPORTER |
AT4G21490 | PredictedPhenotypic Enhancement | FSW = 0.0756
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G22330 | PredictedAffinity Capture-MS | FSW = 0.0894
| Unknown | ATCES1 CATALYTIC/ HYDROLASE ACTING ON CARBON-NITROGEN (BUT NOT PEPTIDE) BONDS IN LINEAR AMIDES |
AT4G29580 | PredictedPhenotypic Enhancement | FSW = 0.1519
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT5G01770 | Predictedtwo hybridPhenotypic Enhancementtwo hybrid | FSW = 0.0621
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G24840 | PredictedPhenotypic Enhancement | FSW = 0.0226
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT1G29150 | PredictedAffinity Capture-MS | FSW = 0.0204
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT1G31170 | PredictedAffinity Capture-MS | FSW = 0.0702
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G80460 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninterologs mapping | FSW = 0.0965
| Unknown | NHO1 (NONHOST RESISTANCE TO P S PHASEOLICOLA 1) CARBOHYDRATE KINASE/ GLYCEROL KINASE |
AT3G06470 | PredictedAffinity Capture-MS | FSW = 0.0592
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G18850 | PredictedAffinity Capture-MS | FSW = 0.0655
| Unknown | LPAT5 ACYLTRANSFERASE |
AT4G29140 | PredictedAffinity Capture-MS | FSW = 0.0285
| Unknown | MATE EFFLUX PROTEIN-RELATED |
AT5G24510 | PredictedAffinity Capture-Western | FSW = 0.0125
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 PUTATIVE |
AT5G59490 | PredictedAffinity Capture-MS | FSW = 0.0277
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
ATCG00905 | PredictedPhenotypic Enhancement | FSW = 0.1226
| Unknown | CHLOROPLAST GENE ENCODING RIBOSOMAL PROTEIN S12 THE GENE IS LOCATED IN THREE DISTINCT LOCI ON THE CHLOROPLAST GENOME AND IS TRANSPLICED TO MAKE ONE TRANSCRIPT |
AT5G55190 | Predictedtwo hybrid | FSW = 0.0093
| Unknown | RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454