Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G46710 - ( rac GTPase activating protein putative )
36 Proteins interacs with AT2G46710Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G63400 | Predictedbiochemical | FSW = 0.0034
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT2G17360 | PredictedSynthetic Rescue | FSW = 0.0053
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT5G19320 | PredictedReconstituted Complexinterologs mapping | FSW = 0.0595
| Unknown | RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) RAN GTPASE ACTIVATOR |
AT4G19640 | PredictedReconstituted Complextwo hybridAffinity Capture-MSAffinity Capture-Western | FSW = 0.0179
| Unknown | ARA7 GTP BINDING |
AT3G26590 | Predictedbiochemical | FSW = 0.0147
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT5G24400 | PredictedReconstituted Complex | FSW = 0.0129
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT2G06850 | PredictedAffinity Capture-MSinterologs mapping | FSW = 0.4829
| Unknown | EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE) HYDROLASE ACTING ON GLYCOSYL BONDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE |
AT1G23740 | PredictedReconstituted ComplexReconstituted Complextwo hybrid | FSW = 0.0333
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT2G47160 | PredictedReconstituted ComplexAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.0632
| Unknown | BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER |
AT1G07180 | Predictedinterologs mappinginterologs mappingAffinity Capture-Western | FSW = 0.0492
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT5G59950 | Predictedinterologs mapping | FSW = 0.0425
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G63490 | Predictedtwo hybrid | FSW = 0.0316
| Unknown | TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN |
AT3G20970 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappinginterologs mappingAffinity Capture-WesternAffinity Capture-Westerninterologs mappingAffinity Capture-MS | FSW = 0.0927
| Unknown | NFU4 STRUCTURAL MOLECULE |
AT4G10920 | PredictedReconstituted ComplexReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternReconstituted Complex | FSW = 0.0757
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT1G19730 | PredictedReconstituted Complex | FSW = 0.0478
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT1G17130 | PredictedReconstituted ComplexReconstituted Complex | FSW = 0.0084
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT1G48605 | PredictedAffinity Capture-WesternAffinity Capture-Westerntwo hybridAffinity Capture-Westerntwo hybridinterologs mapping | FSW = 0.1340
| Unknown | ATHAL3B FMN BINDING / ELECTRON CARRIER/ PHOSPHOPANTOTHENOYLCYSTEINE DECARBOXYLASE |
AT2G15230 | Predictedinterologs mappingAffinity Capture-Westerninterologs mappingtwo hybridAffinity Capture-MStwo hybridReconstituted Complexinterologs mappingAffinity Capture-WesternCo-purification | FSW = 0.0821
| Unknown | ATLIP1 (ARABIDOPSIS THALIANA LIPASE 1) GALACTOLIPASE/ HYDROLASE/ PHOSPHOLIPASE/ TRIACYLGLYCEROL LIPASE |
AT2G20635 | Predictedtwo hybridAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complextwo hybrid | FSW = 0.1718
| Unknown | ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G32160 | Predictedtwo hybrid | FSW = 0.0150
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK) |
AT2G35390 | PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexReconstituted Complextwo hybrid | FSW = 0.0492
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G21730 | PredictedAffinity Capture-Western | FSW = 0.0710
| Unknown | CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT2G34180 | PredictedAffinity Capture-MS | FSW = 0.0447
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G38490 | PredictedReconstituted Complex | FSW = 0.0670
| Unknown | CIPK22 (CBL-INTERACTING PROTEIN KINASE 22) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G18660 | PredictedAffinity Capture-MS | FSW = 0.0138
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G43250 | PredictedReconstituted Complextwo hybridReconstituted ComplexReconstituted ComplexAffinity Capture-WesternAffinity Capture-Westerntwo hybridReconstituted ComplexAffinity Capture-MS | FSW = 0.0566
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT3G59845 | PredictedAffinity Capture-MSbiochemical | FSW = 0.1350
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT4G21800 | PredictedReconstituted ComplexReconstituted ComplexReconstituted Complextwo hybridAffinity Capture-WesternCo-purification | FSW = 0.0927
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT4G22330 | PredictedAffinity Capture-MS | FSW = 0.0743
| Unknown | ATCES1 CATALYTIC/ HYDROLASE ACTING ON CARBON-NITROGEN (BUT NOT PEPTIDE) BONDS IN LINEAR AMIDES |
AT5G06150 | PredictedReconstituted Complex | FSW = 0.0274
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G15070 | PredictedReconstituted ComplexReconstituted ComplexAffinity Capture-WesternReconstituted ComplexAffinity Capture-WesternAffinity Capture-MStwo hybridAffinity Capture-Westernco-fractionationCo-fractionationAffinity Capture-MSReconstituted Complex | FSW = 0.0506
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G16040 | PredictedReconstituted Complex | FSW = 0.0980
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G24510 | PredictedReconstituted Complex | FSW = 0.0948
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 PUTATIVE |
AT3G11530 | PredictedAffinity Capture-MS | FSW = 0.0256
| Unknown | VACUOLAR PROTEIN SORTING 55 FAMILY PROTEIN / VPS55 FAMILY PROTEIN |
AT4G32850 | Predictedinterologs mapping | FSW = 0.0507
| Unknown | NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING |
AT5G19510 | PredictedAffinity Capture-MS | FSW = 0.1021
| Unknown | ELONGATION FACTOR 1B ALPHA-SUBUNIT 2 (EEF1BALPHA2) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454