Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G59950 - ( RNA and export factor-binding protein putative )
50 Proteins interacs with AT5G59950| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G01280
   | PredictedAffinity Capture-MS | FSW = 0.0568
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
| AT3G08710
| PredictedAffinity Capture-MS | FSW = 0.0329
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
| AT3G62870
| Predictedsynthetic growth defect | FSW = 0.0202
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT3G22110
| PredictedAffinity Capture-MSAffinity Capture-MSinterologs mapping | FSW = 0.0533
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT3G16950
| PredictedAffinity Capture-MS | FSW = 0.1304
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
| AT3G18790
| PredictedAffinity Capture-MS | FSW = 0.0388
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK) |
| AT5G62880
| PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | ARAC10 GTP BINDING |
| AT3G45780
| PredictedAffinity Capture-MS | FSW = 0.0212
| Unknown | PHOT1 (PHOTOTROPIN 1) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
| AT4G26110
| Predictedinteraction prediction | FSW = 0.0093
| Unknown | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
| AT3G49370
| PredictedAffinity Capture-MS | FSW = 0.0317
| Unknown | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
| AT2G43810
| PredictedAffinity Capture-MS | FSW = 0.0124
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
| AT2G34720
| Predictedinteraction prediction | FSW = 0.0332
| Unknown | NF-YA4 (NUCLEAR FACTOR Y SUBUNIT A4) SPECIFIC TRANSCRIPTIONAL REPRESSOR/ TRANSCRIPTION FACTOR |
| AT1G72480
| PredictedAffinity Capture-MS | FSW = 0.1161
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
| AT4G31470
| PredictedAffinity Capture-MS | FSW = 0.0278
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
| AT3G08730
| PredictedAffinity Capture-Western | FSW = 0.0482
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G47720
| PredictedAffinity Capture-MS | FSW = 0.0594
| Unknown | ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE |
| AT3G16050
| PredictedAffinity Capture-MS | FSW = 0.1097
| Unknown | A37 PROTEIN HETERODIMERIZATION |
| AT3G23890
| Predictedinteraction prediction | FSW = 0.0331
| Unknown | TOPII (TOPOISOMERASE II) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ DNA TOPOISOMERASE/ DNA-DEPENDENT ATPASE |
| AT5G49060
| PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-Western | FSW = 0.0638
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT3G22880
| PredictedAffinity Capture-MS | FSW = 0.0667
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT4G17190
| PredictedAffinity Capture-MS | FSW = 0.0364
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
| AT1G10090
| PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.0651
| Unknown | UNKNOWN PROTEIN |
| AT1G30580
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0735
| Unknown | GTP BINDING |
| AT1G31170
| PredictedAffinity Capture-MS | FSW = 0.0417
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
| AT1G74320
| PredictedAffinity Capture-MS | FSW = 0.0431
| Unknown | CHOLINE KINASE PUTATIVE |
| AT2G17620
| PredictedAffinity Capture-MS | FSW = 0.1069
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT2G19910
| PredictedAffinity Capture-MS | FSW = 0.1082
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
| AT2G41530
| PredictedAffinity Capture-MS | FSW = 0.0822
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
| AT3G20650
| PredictedAffinity Capture-MS | FSW = 0.0847
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
| AT4G19645
| PredictedAffinity Capture-Western | FSW = 0.1112
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
| AT4G32850
| PredictedPhenotypic Enhancement | FSW = 0.1059
| Unknown | NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING |
| AT4G35620
| PredictedAffinity Capture-MS | FSW = 0.0896
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT4G37680
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1286
| Unknown | HHP4 (HEPTAHELICAL PROTEIN 4) RECEPTOR |
| AT5G06150
| PredictedAffinity Capture-MS | FSW = 0.0615
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT5G28470
| PredictedAffinity Capture-MS | FSW = 0.0616
| Unknown | TRANSPORTER |
| AT2G14880
| PredictedAffinity Capture-MS | FSW = 0.0372
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
| AT2G35390
| PredictedAffinity Capture-MS | FSW = 0.0449
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
| AT2G46710
| Predictedinterologs mapping | FSW = 0.0425
| Unknown | RAC GTPASE ACTIVATING PROTEIN PUTATIVE |
| AT3G51880
| PredictedAffinity Capture-Western | FSW = 0.1187
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
| AT3G53880
| PredictedCo-purification | FSW = 0.0322
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT4G00980
| PredictedAffinity Capture-MS | FSW = 0.0306
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
| AT5G40530
| PredictedAffinity Capture-MS | FSW = 0.0576
| Unknown | EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S METHYLTRANSFERASE-RELATED (INTERPROIPR007823) HAS 293 BLAST HITS TO 293 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 93 FUNGI - 88 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 90 (SOURCE NCBI BLINK) |
| AT5G60870
| PredictedAffinity Capture-MS | FSW = 0.0676
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
| AT5G67380
| Predictedinteraction prediction | FSW = 0.0213
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
| AT5G39770
| Predictedinteraction prediction | FSW = 0.0108
| Unknown | DNA BINDING / ENDONUCLEASE/ NUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING |
| AT5G19820
| Predictedinteraction prediction | FSW = 0.0759
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
| AT5G11200
| Predictedinteraction prediction | FSW = 0.0082
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT3G01160
| Predictedinteraction prediction | FSW = 0.0111
| Unknown | UNKNOWN PROTEIN |
| AT2G28360
| Predictedinteraction prediction | FSW = 0.0159
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK) |
| AT1G17720
| Predictedinteraction prediction | FSW = 0.0131
| Unknown | ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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