Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G14880 - ( SWIB complex BAF60b domain-containing protein )
42 Proteins interacs with AT2G14880Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G30390 | PredictedAffinity Capture-WesternAffinity Capture-WesternPhenotypic Enhancementinterologs mappingAffinity Capture-MS | FSW = 0.2636
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT3G62870 | PredictedAffinity Capture-MS | FSW = 0.0481
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G14320 | PredictedAffinity Capture-MS | FSW = 0.0140
| Unknown | SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G11320 | PredictedPhenotypic Enhancement | FSW = 0.0201
| Unknown | UNKNOWN PROTEIN |
AT1G07890 | PredictedPhenotypic Enhancement | FSW = 0.0944
| Unknown | APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE |
AT2G45130 | PredictedReconstituted Complex | FSW = 0.1452
| Unknown | SPX3 (SPX DOMAIN GENE 3) |
AT5G64270 | PredictedAffinity Capture-MS | FSW = 0.0237
| Unknown | SPLICING FACTOR PUTATIVE |
AT2G01630 | PredictedAffinity Capture-MS | FSW = 0.0261
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN / BETA-13-GLUCANASE PUTATIVE |
AT4G37640 | PredictedAffinity Capture-Western | FSW = 0.0567
| Unknown | ACA2 (CALCIUM ATPASE 2) CALCIUM ION TRANSMEMBRANE TRANSPORTER/ CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING |
AT4G36490 | PredictedAffinity Capture-MS | FSW = 0.0338
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT5G24380 | PredictedAffinity Capture-MS | FSW = 0.0207
| Unknown | YSL2 (YELLOW STRIPE LIKE 2) OLIGOPEPTIDE TRANSPORTER |
AT4G14350 | PredictedAffinity Capture-MS | FSW = 0.0195
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G59950 | PredictedAffinity Capture-MS | FSW = 0.0372
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT2G24490 | PredictedAffinity Capture-MS | FSW = 0.0082
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0324
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT2G38810 | PredictedAffinity Capture-MS | FSW = 0.0261
| Unknown | HTA8 (HISTONE H2A 8) DNA BINDING |
AT1G21190 | PredictedSynthetic Rescueinterologs mappingSynthetic Rescue | FSW = 0.0248
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT5G60980 | PredictedAffinity Capture-MS | FSW = 0.0227
| Unknown | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G02730 | PredictedAffinity Capture-MS | FSW = 0.0649
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT5G66590 | PredictedAffinity Capture-MS | FSW = 0.0317
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33730 | PredictedPhenotypic Enhancement | FSW = 0.0528
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G51300 | PredictedAffinity Capture-MS | FSW = 0.0227
| Unknown | ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1) GTP BINDING / GTPASE ACTIVATING PROTEIN BINDING / GTPASE/ PROTEIN BINDING |
AT1G02100 | PredictedAffinity Capture-MS | FSW = 0.0512
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G06830 | PredictedPhenotypic Enhancement | FSW = 0.0267
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT1G20696 | PredictedAffinity Capture-MS | FSW = 0.0072
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G35750 | PredictedAffinity Capture-MS | FSW = 0.0870
| Unknown | APUM10 (ARABIDOPSIS PUMILIO 10) RNA BINDING / BINDING |
AT1G44820 | PredictedAffinity Capture-MS | FSW = 0.0840
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT1G76920 | PredictedPhenotypic Suppression | FSW = 0.0330
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT1G80710 | PredictedAffinity Capture-MS | FSW = 0.0306
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G03690 | PredictedAffinity Capture-MS | FSW = 0.0413
| Unknown | COENZYME Q BIOSYNTHESIS COQ4 FAMILY PROTEIN / UBIQUINONE BIOSYNTHESIS COQ4 FAMILY PROTEIN |
AT1G68390 | PredictedReconstituted Complex | FSW = 0.1508
| Unknown | UNKNOWN PROTEIN |
AT2G46070 | PredictedAffinity Capture-Western | FSW = 0.0591
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
AT5G53940 | PredictedSynthetic RescueAffinity Capture-Western | FSW = 0.0718
| Unknown | YIPPEE FAMILY PROTEIN |
AT2G22040 | PredictedAffinity Capture-MS | FSW = 0.0353
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G25100 | PredictedAffinity Capture-MS | FSW = 0.0137
| Unknown | RIBONUCLEASE HII FAMILY PROTEIN |
AT2G44820 | PredictedAffinity Capture-MS | FSW = 0.0613
| Unknown | UNKNOWN PROTEIN |
AT3G16840 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0366
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G59290 | PredictedPhenotypic Enhancement | FSW = 0.0473
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT4G21480 | PredictedAffinity Capture-MS | FSW = 0.0260
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G32850 | PredictedAffinity Capture-MS | FSW = 0.0296
| Unknown | NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING |
AT4G37680 | PredictedAffinity Capture-MS | FSW = 0.0548
| Unknown | HHP4 (HEPTAHELICAL PROTEIN 4) RECEPTOR |
AT5G61150 | PredictedAffinity Capture-MS | FSW = 0.0041
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454