Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G38810 - ( HTA8 (HISTONE H2A 8) DNA binding )
26 Proteins interacs with AT2G38810Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G12810 | Experimental | FSW = 0.1599
| Class A:nucleusClass D:plastid (p = 0.78)nucleus (p = 0.78) | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G33520 | Experimental | FSW = 0.0737
| Class A:nucleusClass D:nucleus (p = 0.78) | ATARP6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G43700 | Experimental | FSW = 0.0276
| Class A:nucleusClass D:nucleus (p = 0.78) | VIP1 (VIRE2-INTERACTING PROTEIN 1) PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT5G67270 | Predictedinteraction predictionCo-expression | FSW = 0.1518
| Class C:nucleus | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT5G27720 | PredictedPhenotypic Enhancement | FSW = 0.0163
| Class C:nucleus | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT1G05120 | Predictedinteraction prediction | FSW = 0.0613
| Class C:nucleus | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT2G44610 | Predictedinteraction prediction | FSW = 0.0298
| Unknown | RAB6A GTP BINDING / PROTEIN BINDING |
AT3G62870 | PredictedAffinity Capture-MS | FSW = 0.0042
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT4G26110 | Predictedinteraction prediction | FSW = 0.0283
| Unknown | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
AT3G25980 | Predictedinteraction predictionCo-expression | FSW = 0.0947
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT2G14880 | PredictedAffinity Capture-MS | FSW = 0.0261
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT2G31900 | PredictedAffinity Capture-MS | FSW = 0.0090
| Unknown | XIF MOTOR |
AT3G49880 | PredictedAffinity Capture-MS | FSW = 0.0272
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT5G24410 | PredictedAffinity Capture-MS | FSW = 0.0135
| Unknown | GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED |
AT5G15070 | PredictedAffinity Capture-MS | FSW = 0.0655
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G49510 | Predictedinteraction predictionCo-expression | FSW = 0.1283
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G23290 | Predictedinteraction predictionCo-expression | FSW = 0.1438
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT3G42660 | Predictedinteraction predictionCo-expression | FSW = 0.1112
| Unknown | NUCLEOTIDE BINDING |
AT3G22590 | Predictedinteraction predictionCo-expression | FSW = 0.0367
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT3G22480 | Predictedinteraction predictionCo-expression | FSW = 0.1063
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT2G44580 | Predictedinteraction prediction | FSW = 0.1271
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT2G44150 | Predictedinteraction prediction | FSW = 0.0744
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT1G29990 | Predictedinteraction prediction | FSW = 0.1000
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G08780 | Predictedinteraction predictionCo-expression | FSW = 0.1448
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G04730 | Predictedinteraction predictionCo-expression | FSW = 0.0935
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT3G54560 | PredictedGene fusion methodCo-expression | FSW = 0.1720
| Unknown | HTA11 DNA BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454