Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G26110 - ( NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA binding )

68 Proteins interacs with AT4G26110
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G31700

Predicted

Affinity Capture-MS

FSW = 0.0141

Class C:

plasma membrane

RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G34670

Predicted

Affinity Capture-MS

FSW = 0.0107

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT4G29810

Predicted

Affinity Capture-MS

FSW = 0.0102

Class C:

plasma membrane

ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) MAP KINASE KINASE/ KINASE
AT4G35020

Predicted

Synthetic Rescue

FSW = 0.0169

Class C:

plasma membrane

ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE
AT3G18524

Predicted

Phenotypic Enhancement

FSW = 0.0259

Class C:

plasma membrane

MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT5G09590

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0111

Unknown

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT1G44170

Predicted

Affinity Capture-MS

FSW = 0.0139

Unknown

ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD)
AT5G22440

Predicted

Affinity Capture-MS

FSW = 0.0150

Unknown

60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT5G59690Predicted

Affinity Capture-Western

FSW = 0.0602

Unknown

HISTONE H4
AT5G16630

Predicted

Phenotypic Enhancement

FSW = 0.0246

Unknown

RAD4 DAMAGED DNA BINDING
AT5G58230

Predicted

Phenotypic Enhancement

FSW = 0.0482

Unknown

MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING
AT5G23010

Predicted

Affinity Capture-MS

FSW = 0.0250

Unknown

MAM1 (METHYLTHIOALKYLMALATE SYNTHASE 1) 2-ISOPROPYLMALATE SYNTHASE/ METHYLTHIOALKYLMALATE SYNTHASE
AT2G45300

Predicted

Phenotypic Suppression

FSW = 0.0168

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT5G53480

Predicted

interaction prediction

FSW = 0.0228

Unknown

IMPORTIN BETA-2 PUTATIVE
AT1G71440

Predicted

Phenotypic Enhancement

FSW = 0.0274

Unknown

PFI (PFIFFERLING)
AT5G59950

Predicted

interaction prediction

FSW = 0.0093

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT5G19180

Predicted

Phenotypic Enhancement

FSW = 0.0781

Unknown

ECR1 (E1 C-TERMINAL RELATED 1) NEDD8 ACTIVATING ENZYME/ PROTEIN HETERODIMERIZATION/ SMALL PROTEIN ACTIVATING ENZYME
AT3G10330

Predicted

Reconstituted Complex

FSW = 0.0353

Unknown

TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2)
AT2G45490

Predicted

biochemical

FSW = 0.0356

Unknown

ATAUR3 (ATAURORA3) ATP BINDING / HISTONE KINASE(H3-S10 SPECIFIC) / PROTEIN KINASE
AT4G10710

Predicted

Affinity Capture-MS

FSW = 0.1232

Unknown

SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT2G24490

Predicted

Phenotypic Suppression

FSW = 0.0258

Unknown

RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING
AT5G41580

Predicted

Phenotypic Enhancement

FSW = 0.0172

Unknown

ZINC ION BINDING
AT2G38810

Predicted

interaction prediction

FSW = 0.0283

Unknown

HTA8 (HISTONE H2A 8) DNA BINDING
AT3G13445

Predicted

Affinity Capture-MS

FSW = 0.0247

Unknown

TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT5G37720

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0412

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT2G15430

Predicted

Phenotypic Enhancement

FSW = 0.0243

Unknown

NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT2G37470

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0506

Unknown

HISTONE H2B PUTATIVE
AT2G24500

Predicted

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Enhancement

FSW = 0.0199

Unknown

FZF TRANSCRIPTION FACTOR
AT2G34720

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0250

Unknown

NF-YA4 (NUCLEAR FACTOR Y SUBUNIT A4) SPECIFIC TRANSCRIPTIONAL REPRESSOR/ TRANSCRIPTION FACTOR
AT1G19120

Predicted

Phenotypic Enhancement

FSW = 0.0651

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G03870

Predicted

Phenotypic Suppression

FSW = 0.0279

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT3G28730

Predicted

Affinity Capture-MS

FSW = 0.0527

Unknown

ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT5G14800

Predicted

Affinity Capture-MS

FSW = 0.0172

Unknown

P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE) PYRROLINE-5-CARBOXYLATE REDUCTASE
AT3G02580

Predicted

Phenotypic Enhancement

FSW = 0.0122

Unknown

STE1 (STEROL 1) C-5 STEROL DESATURASE
AT1G08880

Predicted

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0730

Unknown

H2AXA DNA BINDING
AT1G13160

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

two hybrid

interaction prediction

Co-expression

FSW = 0.0250

Unknown

SDA1 FAMILY PROTEIN
AT1G26170Predicted

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-MS

synthetic growth defect

interaction prediction

FSW = 0.1598

Unknown

BINDING / PROTEIN TRANSPORTER
AT1G52740

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1001

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT2G27970

Predicted

Phenotypic Enhancement

FSW = 0.0092

Unknown

CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT3G10070

Predicted

Phenotypic Suppression

FSW = 0.0271

Unknown

TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT4G00720

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0094

Unknown

ATSK32 (SHAGGY-LIKE PROTEIN KINASE 32) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT1G04130

Predicted

Affinity Capture-MS

FSW = 0.0365

Unknown

TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT1G07140

Predicted

interaction prediction

two hybrid

FSW = 0.0263

Unknown

SIRANBP RAN GTPASE BINDING
AT1G08780

Predicted

Phenotypic Enhancement

FSW = 0.0490

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G17130

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0046

Unknown

CELL CYCLE CONTROL PROTEIN-RELATED
AT1G49540

Predicted

Synthetic Lethality

FSW = 0.0610

Unknown

NUCLEOTIDE BINDING
AT1G52160

Predicted

Affinity Capture-MS

FSW = 0.0282

Unknown

TRZ3 (TRNASE Z 3) 3-TRNA PROCESSING ENDORIBONUCLEASE/ CATALYTIC
AT1G60620

Predicted

Phenotypic Enhancement

FSW = 0.0332

Unknown

ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT2G37840

Predicted

biochemical

FSW = 0.0243

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT2G39770

Predicted

Affinity Capture-MS

FSW = 0.0092

Unknown

CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT2G40730

Predicted

Affinity Capture-MS

FSW = 0.0188

Unknown

HEAT REPEAT-CONTAINING PROTEIN
AT3G06483

Predicted

biochemical

FSW = 0.0181

Unknown

PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE
AT3G15970

Predicted

Affinity Capture-MS

FSW = 0.0351

Unknown

RAN-BINDING PROTEIN 1 DOMAIN-CONTAINING PROTEIN / RANBP1 DOMAIN-CONTAINING PROTEIN
AT4G11920

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0146

Unknown

CCS52A2 SIGNAL TRANSDUCER
AT4G14320Predicted

Affinity Capture-MS

FSW = 0.0132

Unknown

60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AB)
AT4G25120Predicted

two hybrid

FSW = 0.0370

Unknown

ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT5G10400Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0651

Unknown

HISTONE H3
AT5G13680

Predicted

Synthetic Lethality

FSW = 0.0300

Unknown

ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR
AT5G13780

Predicted

Affinity Capture-MS

FSW = 0.0324

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G14520

Predicted

Affinity Capture-MS

FSW = 0.0083

Unknown

PESCADILLO-RELATED
AT5G15070

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0221

Unknown

ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING
AT5G41880

Predicted

Affinity Capture-MS

FSW = 0.0489

Unknown

POLA3 DNA PRIMASE
AT5G48640

Predicted

Phenotypic Suppression

FSW = 0.0215

Unknown

CYCLIN FAMILY PROTEIN
AT5G50320

Predicted

Synthetic Lethality

FSW = 0.0617

Unknown

ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT5G53770

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0094

Unknown

NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT5G63610

Predicted

Phenotypic Suppression

FSW = 0.0100

Unknown

CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G38900

Predicted

interaction prediction

FSW = 0.0146

Unknown

BZIP PROTEIN
AT3G53650

Predicted

interaction prediction

FSW = 0.0199

Unknown

HISTONE H2B PUTATIVE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454