Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G26110 - ( NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA binding )
68 Proteins interacs with AT4G26110Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G31700 | PredictedAffinity Capture-MS | FSW = 0.0141
| Class C:plasma membrane | RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G34670 | PredictedAffinity Capture-MS | FSW = 0.0107
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S3A (RPS3AB) |
AT4G29810 | PredictedAffinity Capture-MS | FSW = 0.0102
| Class C:plasma membrane | ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) MAP KINASE KINASE/ KINASE |
AT4G35020 | PredictedSynthetic Rescue | FSW = 0.0169
| Class C:plasma membrane | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
AT3G18524 | PredictedPhenotypic Enhancement | FSW = 0.0259
| Class C:plasma membrane | MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING |
AT5G09590 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0111
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT1G44170 | PredictedAffinity Capture-MS | FSW = 0.0139
| Unknown | ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD) |
AT5G22440 | PredictedAffinity Capture-MS | FSW = 0.0150
| Unknown | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
AT5G59690 | PredictedAffinity Capture-Western | FSW = 0.0602
| Unknown | HISTONE H4 |
AT5G16630 | PredictedPhenotypic Enhancement | FSW = 0.0246
| Unknown | RAD4 DAMAGED DNA BINDING |
AT5G58230 | PredictedPhenotypic Enhancement | FSW = 0.0482
| Unknown | MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING |
AT5G23010 | PredictedAffinity Capture-MS | FSW = 0.0250
| Unknown | MAM1 (METHYLTHIOALKYLMALATE SYNTHASE 1) 2-ISOPROPYLMALATE SYNTHASE/ METHYLTHIOALKYLMALATE SYNTHASE |
AT2G45300 | PredictedPhenotypic Suppression | FSW = 0.0168
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT5G53480 | Predictedinteraction prediction | FSW = 0.0228
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT1G71440 | PredictedPhenotypic Enhancement | FSW = 0.0274
| Unknown | PFI (PFIFFERLING) |
AT5G59950 | Predictedinteraction prediction | FSW = 0.0093
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT5G19180 | PredictedPhenotypic Enhancement | FSW = 0.0781
| Unknown | ECR1 (E1 C-TERMINAL RELATED 1) NEDD8 ACTIVATING ENZYME/ PROTEIN HETERODIMERIZATION/ SMALL PROTEIN ACTIVATING ENZYME |
AT3G10330 | PredictedReconstituted Complex | FSW = 0.0353
| Unknown | TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2) |
AT2G45490 | Predictedbiochemical | FSW = 0.0356
| Unknown | ATAUR3 (ATAURORA3) ATP BINDING / HISTONE KINASE(H3-S10 SPECIFIC) / PROTEIN KINASE |
AT4G10710 | PredictedAffinity Capture-MS | FSW = 0.1232
| Unknown | SPT16 (GLOBAL TRANSCRIPTION FACTOR C) |
AT2G24490 | PredictedPhenotypic Suppression | FSW = 0.0258
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT5G41580 | PredictedPhenotypic Enhancement | FSW = 0.0172
| Unknown | ZINC ION BINDING |
AT2G38810 | Predictedinteraction prediction | FSW = 0.0283
| Unknown | HTA8 (HISTONE H2A 8) DNA BINDING |
AT3G13445 | PredictedAffinity Capture-MS | FSW = 0.0247
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT5G37720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0412
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT2G15430 | PredictedPhenotypic Enhancement | FSW = 0.0243
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G37470 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0506
| Unknown | HISTONE H2B PUTATIVE |
AT2G24500 | PredictedAffinity Capture-MSAffinity Capture-MSPhenotypic Enhancement | FSW = 0.0199
| Unknown | FZF TRANSCRIPTION FACTOR |
AT2G34720 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0250
| Unknown | NF-YA4 (NUCLEAR FACTOR Y SUBUNIT A4) SPECIFIC TRANSCRIPTIONAL REPRESSOR/ TRANSCRIPTION FACTOR |
AT1G19120 | PredictedPhenotypic Enhancement | FSW = 0.0651
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G03870 | PredictedPhenotypic Suppression | FSW = 0.0279
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT3G28730 | PredictedAffinity Capture-MS | FSW = 0.0527
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
AT5G14800 | PredictedAffinity Capture-MS | FSW = 0.0172
| Unknown | P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE) PYRROLINE-5-CARBOXYLATE REDUCTASE |
AT3G02580 | PredictedPhenotypic Enhancement | FSW = 0.0122
| Unknown | STE1 (STEROL 1) C-5 STEROL DESATURASE |
AT1G08880 | PredictedAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0730
| Unknown | H2AXA DNA BINDING |
AT1G13160 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MStwo hybridinteraction predictionCo-expression | FSW = 0.0250
| Unknown | SDA1 FAMILY PROTEIN |
AT1G26170 | PredictedAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSReconstituted ComplexAffinity Capture-MSsynthetic growth defectinteraction prediction | FSW = 0.1598
| Unknown | BINDING / PROTEIN TRANSPORTER |
AT1G52740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1001
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT2G27970 | PredictedPhenotypic Enhancement | FSW = 0.0092
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT3G10070 | PredictedPhenotypic Suppression | FSW = 0.0271
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT4G00720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0094
| Unknown | ATSK32 (SHAGGY-LIKE PROTEIN KINASE 32) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G04130 | PredictedAffinity Capture-MS | FSW = 0.0365
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT1G07140 | Predictedinteraction predictiontwo hybrid | FSW = 0.0263
| Unknown | SIRANBP RAN GTPASE BINDING |
AT1G08780 | PredictedPhenotypic Enhancement | FSW = 0.0490
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G17130 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0046
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT1G49540 | PredictedSynthetic Lethality | FSW = 0.0610
| Unknown | NUCLEOTIDE BINDING |
AT1G52160 | PredictedAffinity Capture-MS | FSW = 0.0282
| Unknown | TRZ3 (TRNASE Z 3) 3-TRNA PROCESSING ENDORIBONUCLEASE/ CATALYTIC |
AT1G60620 | PredictedPhenotypic Enhancement | FSW = 0.0332
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G37840 | Predictedbiochemical | FSW = 0.0243
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G39770 | PredictedAffinity Capture-MS | FSW = 0.0092
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT2G40730 | PredictedAffinity Capture-MS | FSW = 0.0188
| Unknown | HEAT REPEAT-CONTAINING PROTEIN |
AT3G06483 | Predictedbiochemical | FSW = 0.0181
| Unknown | PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE |
AT3G15970 | PredictedAffinity Capture-MS | FSW = 0.0351
| Unknown | RAN-BINDING PROTEIN 1 DOMAIN-CONTAINING PROTEIN / RANBP1 DOMAIN-CONTAINING PROTEIN |
AT4G11920 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0146
| Unknown | CCS52A2 SIGNAL TRANSDUCER |
AT4G14320 | PredictedAffinity Capture-MS | FSW = 0.0132
| Unknown | 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AB) |
AT4G25120 | Predictedtwo hybrid | FSW = 0.0370
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT5G10400 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0651
| Unknown | HISTONE H3 |
AT5G13680 | PredictedSynthetic Lethality | FSW = 0.0300
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
AT5G13780 | PredictedAffinity Capture-MS | FSW = 0.0324
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G14520 | PredictedAffinity Capture-MS | FSW = 0.0083
| Unknown | PESCADILLO-RELATED |
AT5G15070 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0221
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G41880 | PredictedAffinity Capture-MS | FSW = 0.0489
| Unknown | POLA3 DNA PRIMASE |
AT5G48640 | PredictedPhenotypic Suppression | FSW = 0.0215
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G50320 | PredictedSynthetic Lethality | FSW = 0.0617
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
AT5G53770 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0094
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT5G63610 | PredictedPhenotypic Suppression | FSW = 0.0100
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G38900 | Predictedinteraction prediction | FSW = 0.0146
| Unknown | BZIP PROTEIN |
AT3G53650 | Predictedinteraction prediction | FSW = 0.0199
| Unknown | HISTONE H2B PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454