Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G44170 - ( ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1) 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) )
32 Proteins interacs with AT1G44170Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G09590 | PredictedSynthetic Lethality | FSW = 0.0159
| Class C:vacuole | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT2G01690 | PredictedSynthetic Lethality | FSW = 0.0073
| Class C:vacuole | BINDING |
AT4G36250 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1153
| Class C:endoplasmic reticulum | ALDH3F1 (ALDEHYDE DEHYDROGENASE 3F1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD) |
AT4G01510 | PredictedAffinity Capture-MS | FSW = 0.0566
| Class C:endoplasmic reticulum | ARV2 |
AT4G30310 | PredictedSynthetic Lethality | FSW = 0.0526
| Unknown | RIBITOL KINASE PUTATIVE |
AT5G15450 | Predictedtwo hybrid | FSW = 0.0114
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G34240 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1429
| Unknown | ALDH3I1 (ALDEHYDE DEHYDROGENASE 3 |
AT4G26390 | Predictedtwo hybrid | FSW = 0.0500
| Unknown | PYRUVATE KINASE PUTATIVE |
AT5G56350 | Predictedtwo hybrid | FSW = 0.0376
| Unknown | PYRUVATE KINASE PUTATIVE |
AT1G20090 | Predictedinterologs mapping | FSW = 0.0527
| Unknown | ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING |
AT1G62740 | Predictedtwo hybrid | FSW = 0.0278
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT4G26110 | PredictedAffinity Capture-MS | FSW = 0.0139
| Unknown | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
AT2G47160 | PredictedAffinity Capture-MS | FSW = 0.0093
| Unknown | BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER |
AT1G78000 | Predictedsynthetic growth defect | FSW = 0.0290
| Unknown | SULTR12 (SULFATE TRANSPORTER 12) SULFATE TRANSMEMBRANE TRANSPORTER |
AT2G19480 | PredictedAffinity Capture-MS | FSW = 0.0217
| Unknown | NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING |
AT3G10920 | Predictedinterologs mappingSynthetic Rescue | FSW = 0.0096
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT2G14580 | PredictedSynthetic Lethality | FSW = 0.0063
| Unknown | ATPRB1 |
AT1G54100 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0667
| Unknown | ALDH7B4 (ALDEHYDE DEHYDROGENASE 7B4) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT3G14290 | PredictedAffinity Capture-MS | FSW = 0.0227
| Unknown | PAE2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G10210 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.0071
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G11510 | Predictedsynthetic growth defect | FSW = 0.0228
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
AT2G29190 | Predictedinterologs mappinginterologs mapping | FSW = 0.0169
| Unknown | APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING |
AT3G27570 | PredictedSynthetic Lethality | FSW = 0.0250
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S THIOREDOXIN FOLD (INTERPROIPR012335) SUCRASEFERREDOXIN-LIKE (INTERPROIPR009737) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G405101) HAS 291 BLAST HITS TO 291 PROTEINS IN 98 SPECIES ARCHAE - 6 BACTERIA - 47 METAZOA - 0 FUNGI - 168 PLANTS - 40 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT3G51110 | Predictedinterologs mapping | FSW = 0.0945
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT3G61210 | Predictedtwo hybrid | FSW = 0.0158
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT4G30480 | Predictedco-fractionationCo-fractionation | FSW = 0.0163
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT1G55255 | PredictedAffinity Capture-MS | FSW = 0.0045
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT3G11830 | PredictedSynthetic Lethality | FSW = 0.0345
| Unknown | CHAPERONIN PUTATIVE |
AT3G14390 | PredictedSynthetic Lethality | FSW = 0.0455
| Unknown | DIAMINOPIMELATE DECARBOXYLASE PUTATIVE / DAP CARBOXYLASE PUTATIVE |
AT3G27110 | PredictedAffinity Capture-MS | FSW = 0.0127
| Unknown | PEPTIDASE M48 FAMILY PROTEIN |
AT1G12270 | Predictedtwo hybrid | FSW = 0.0294
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT2G24270 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0667
| Unknown | ALDH11A3 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (NADP+) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454