Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G10920 - ( MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) metal ion binding / superoxide dismutase )
100 Proteins interacs with AT3G10920| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G16480
   | PredictedAffinity Capture-MS | FSW = 0.0152
| Class C:mitochondrion | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
| AT4G28390
| PredictedAffinity Capture-MS | FSW = 0.0108
| Class C:mitochondrion | AAC3 (ADP/ATP CARRIER 3) ATPADP ANTIPORTER/ BINDING |
| AT2G29990
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4403
| Class C:mitochondrion | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
| AT4G25100
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0433
| Class C:mitochondrion | FSD1 (FE SUPEROXIDE DISMUTASE 1) COPPER ION BINDING / SUPEROXIDE DISMUTASE |
| AT2G31170
| PredictedAffinity Capture-MS | FSW = 0.1595
| Class C:mitochondrion | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
| AT4G26970
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4050
| Class C:mitochondrion | ACONITATE HYDRATASE/ COPPER ION BINDING |
| AT2G39795
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1797
| Class C:mitochondrion | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
| AT1G35940 | PredictedSynthetic Lethality | FSW = 0.0119
| Class C:mitochondrion | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
| AT3G20970
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1166
| Class C:mitochondrion | NFU4 STRUCTURAL MOLECULE |
| AT1G76030
| PredictedPhenotypic Enhancement | FSW = 0.0142
| Unknown | VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT |
| AT2G01250
| PredictedAffinity Capture-MS | FSW = 0.2087
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
| AT2G20450
| PredictedAffinity Capture-MS | FSW = 0.1677
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
| AT2G27020
| PredictedAffinity Capture-MS | FSW = 0.0127
| Unknown | PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT1G44170
| Predictedinterologs mappingSynthetic Rescue | FSW = 0.0096
| Unknown | ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD) |
| AT4G21980
| PredictedAffinity Capture-Western | FSW = 0.0391
| Unknown | APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE |
| AT5G24780
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5053
| Unknown | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
| AT3G62870
| PredictedAffinity Capture-MS | FSW = 0.0511
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT2G28190
| PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0135
| Unknown | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
| AT4G23430
| PredictedAffinity Capture-MS | FSW = 0.2928
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
| AT5G23740
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1390
| Unknown | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G62880
| PredictedAffinity Capture-MS | FSW = 0.0245
| Unknown | ARAC10 GTP BINDING |
| AT1G27970
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3142
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
| AT2G21540
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4334
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
| AT4G34230
| PredictedAffinity Capture-MS | FSW = 0.0265
| Unknown | ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5) CINNAMYL-ALCOHOL DEHYDROGENASE |
| AT1G07670
| PredictedSynthetic RescuePhenotypic Enhancement | FSW = 0.0132
| Unknown | CALCIUM-TRANSPORTING ATPASE |
| AT5G08570
| PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | PYRUVATE KINASE PUTATIVE |
| AT5G62300
| PredictedAffinity Capture-MS | FSW = 0.2370
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
| AT1G79450
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0099
| Unknown | ALIS5 (ALA-INTERACTING SUBUNIT 5) |
| AT4G22120
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3683
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
| AT1G70490 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2813
| Unknown | ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
| AT5G12350
| PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0665
| Unknown | RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING |
| AT4G29360
| PredictedAffinity Capture-MS | FSW = 0.0105
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
| AT4G36860
| PredictedAffinity Capture-MS | FSW = 0.1713
| Unknown | ZINC ION BINDING |
| AT2G17440
| PredictedSynthetic Lethality | FSW = 0.0055
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
| AT2G07640
| PredictedAffinity Capture-MS | FSW = 0.0948
| Unknown | D2D4-DIENOYL-COA REDUCTASE-RELATED |
| AT2G25880
| PredictedAffinity Capture-MS | FSW = 0.0058
| Unknown | ATAUR2 (ATAURORA2) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE |
| AT2G47640
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1663
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
| AT3G54610
| PredictedAffinity Capture-MS | FSW = 0.0015
| Unknown | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
| AT5G44500
| PredictedAffinity Capture-MS | FSW = 0.1855
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
| AT4G34430
| PredictedAffinity Capture-MS | FSW = 0.0118
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
| AT2G13570
| PredictedAffinity Capture-MS | FSW = 0.0231
| Unknown | NF-YB7 (NUCLEAR FACTOR Y SUBUNIT B7) TRANSCRIPTION FACTOR |
| AT1G65700
| Predictedtwo hybridtwo hybrid | FSW = 0.0043
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT5G57625
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3736
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
| AT4G33710
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2537
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
| AT1G10130
| PredictedSynthetic Rescue | FSW = 0.0099
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
| AT4G01510
| PredictedSynthetic Rescue | FSW = 0.0350
| Unknown | ARV2 |
| AT3G16050
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3227
| Unknown | A37 PROTEIN HETERODIMERIZATION |
| AT4G10920
| PredictedAffinity Capture-MS | FSW = 0.0317
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
| AT3G05210
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0043
| Unknown | ERCC1 5-FLAP ENDONUCLEASE |
| AT1G08830
| PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0087
| Unknown | CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) SUPEROXIDE DISMUTASE |
| AT1G24706
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3268
| Unknown | UNKNOWN PROTEIN |
| AT1G58520
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4115
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
| AT1G63370
| PredictedAffinity Capture-MS | FSW = 0.0318
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
| AT1G63660
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2081
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
| AT1G64480
| PredictedAffinity Capture-MS | FSW = 0.2130
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
| AT1G78290
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2918
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
| AT1G80510
| PredictedAffinity Capture-MS | FSW = 0.0349
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
| AT2G01770
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4374
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
| AT2G03410
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2756
| Unknown | MO25 FAMILY PROTEIN |
| AT2G03667
| PredictedAffinity Capture-MS | FSW = 0.1399
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
| AT2G16740
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1367
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
| AT2G17620
| PredictedAffinity Capture-MS | FSW = 0.2419
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT2G19910
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3667
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
| AT2G37760
| PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.2884
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT2G39590
| PredictedAffinity Capture-MS | FSW = 0.0145
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AC) |
| AT2G41530
| PredictedAffinity Capture-Western | FSW = 0.3406
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
| AT2G43360
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5299
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
| AT2G45080
| PredictedAffinity Capture-MS | FSW = 0.2512
| Unknown | CYCP31 (CYCLIN P31) CYCLIN-DEPENDENT PROTEIN KINASE |
| AT1G01930
| PredictedAffinity Capture-MS | FSW = 0.0454
| Unknown | ZINC FINGER PROTEIN-RELATED |
| AT1G34580
| PredictedAffinity Capture-MS | FSW = 0.0951
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
| AT2G27340
| PredictedAffinity Capture-MS | FSW = 0.0686
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK) |
| AT2G46860
| PredictedAffinity Capture-MS | FSW = 0.3142
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
| AT2G47570
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2912
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
| AT3G13210
| Predictedinterologs mapping | FSW = 0.0137
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
| AT3G18850
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2716
| Unknown | LPAT5 ACYLTRANSFERASE |
| AT3G19940
| PredictedAffinity Capture-MS | FSW = 0.1177
| Unknown | SUGAR TRANSPORTER PUTATIVE |
| AT3G49880
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3640
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
| AT3G51880
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3890
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
| AT3G52560
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1521
| Unknown | UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT3G53730
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4266
| Unknown | HISTONE H4 |
| AT3G59410
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3523
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT4G19645
| PredictedAffinity Capture-MS | FSW = 0.3079
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
| AT4G25860
| PredictedAffinity Capture-MS | FSW = 0.2129
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
| AT4G26230
| PredictedAffinity Capture-MS | FSW = 0.0578
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
| AT4G35620
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4110
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT5G19150
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4266
| Unknown | CARBOHYDRATE KINASE FAMILY |
| AT5G19820
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2577
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
| AT5G49560
| PredictedAffinity Capture-MS | FSW = 0.0190
| Unknown | UNKNOWN PROTEIN |
| AT3G11240
| PredictedAffinity Capture-MS | FSW = 0.0105
| Unknown | ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE |
| AT3G20650
| PredictedAffinity Capture-MS | FSW = 0.2070
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
| AT3G26500
| PredictedSynthetic Lethality | FSW = 0.0042
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
| AT3G30842
| PredictedAffinity Capture-MS | FSW = 0.2124
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT5G06150
| PredictedAffinity Capture-MS | FSW = 0.0340
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT5G17000
| PredictedAffinity Capture-MS | FSW = 0.1946
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
| AT5G19510
| PredictedAffinity Capture-MS | FSW = 0.0345
| Unknown | ELONGATION FACTOR 1B ALPHA-SUBUNIT 2 (EEF1BALPHA2) |
| AT5G20560
| PredictedAffinity Capture-MS | FSW = 0.0074
| Unknown | BETA-13-GLUCANASE PUTATIVE |
| AT5G27640
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3916
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
| AT5G39400
| PredictedAffinity Capture-MS | FSW = 0.0270
| Unknown | PTEN1 PHOSPHATASE |
| AT5G01230
| Predictedtwo hybridinteraction prediction | FSW = 0.0104
| Unknown | FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN |
| AT3G56350
| PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0495
| Unknown | SUPEROXIDE DISMUTASE (MN) PUTATIVE / MANGANESE SUPEROXIDE DISMUTASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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