Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G28390 - ( AAC3 (ADP/ATP CARRIER 3) ATPADP antiporter/ binding )
28 Proteins interacs with AT4G28390Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G08580 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.0980
| Class C:unclearplastidmitochondrion | AAC1 (ADP/ATP CARRIER 1) ATPADP ANTIPORTER/ BINDING |
AT5G13490 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.0817
| Class C:unclearplastidmitochondrion | AAC2 (ADP/ATP CARRIER 2) ATPADP ANTIPORTER/ BINDING |
AT3G16480 | PredictedSynthetic Lethality | FSW = 0.2036
| Class C:unclearmitochondrion | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
AT4G26180 | PredictedPhylogenetic profile method | FSW = 0.1077
| Class C:mitochondrion | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT2G47510 | PredictedAffinity Capture-MS | FSW = 0.0633
| Class C:mitochondrion | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
AT5G17400 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2743
| Class C:mitochondrion | ER-ANT1 (ENDOPLASMIC RETICULUM-DENINE NUCLEOTIDE TRANSPORTER 1) ATPADP ANTIPORTER/ BINDING |
AT5G56450 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2939
| Class C:mitochondrion | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT3G10920 | PredictedAffinity Capture-MS | FSW = 0.0108
| Class C:mitochondrion | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT4G19640 | Predictedsynthetic growth defectinterologs mapping | FSW = 0.0223
| Unknown | ARA7 GTP BINDING |
AT3G26590 | Predictedbiochemical | FSW = 0.0182
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G55690 | Predictedinterologs mapping | FSW = 0.0205
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT5G40370 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0600
| Unknown | GLUTAREDOXIN PUTATIVE |
AT3G53870 | Predictedbiochemical | FSW = 0.0083
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT4G13980 | Predictedbiochemical | FSW = 0.0164
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G40290 | PredictedAffinity Capture-MS | FSW = 0.0215
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT4G36960 | PredictedGene fusion method | FSW = 0.0469
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G07470 | Predictedinterologs mapping | FSW = 0.0143
| Unknown | TRANSCRIPTION FACTOR IIA LARGE SUBUNIT PUTATIVE / TFIIA LARGE SUBUNIT PUTATIVE |
AT1G47490 | PredictedAffinity Capture-MSCo-crystal Structureinterologs mapping | FSW = 0.1582
| Unknown | ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C) RNA BINDING |
AT2G21730 | PredictedAffinity Capture-Westernsynthetic growth defect | FSW = 0.0536
| Unknown | CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT1G10090 | PredictedSynthetic Lethality | FSW = 0.0146
| Unknown | UNKNOWN PROTEIN |
AT1G10210 | PredictedAffinity Capture-MS | FSW = 0.0206
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT2G31020 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0167
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT3G06470 | Predictedbiochemical | FSW = 0.0519
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G21460 | PredictedAffinity Capture-MS | FSW = 0.0176
| Unknown | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT4G33070 | PredictedAffinity Capture-MS | FSW = 0.0467
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT5G24840 | PredictedDosage Growth Defect | FSW = 0.0163
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G44740 | Predictedbiochemical | FSW = 0.0092
| Unknown | POLH (Y-FAMILT DNA POLYMERASE H) DNA-DIRECTED DNA POLYMERASE |
AT5G67100 | PredictedAffinity Capture-MS | FSW = 0.0452
| Unknown | ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454