Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G67100 - ( ICU2 (INCURVATA2) DNA-directed DNA polymerase )
59 Proteins interacs with AT5G67100Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G17690 | Experimentalpull down | FSW = 0.0136
| Unknown | TFL2 (TERMINAL FLOWER 2) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G16480 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0346
| Unknown | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
AT3G04120 | PredictedAffinity Capture-MS | FSW = 0.0327
| Unknown | GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT3G62870 | Predictedtwo hybridsynthetic growth defect | FSW = 0.0123
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT4G28390 | PredictedAffinity Capture-MS | FSW = 0.0452
| Unknown | AAC3 (ADP/ATP CARRIER 3) ATPADP ANTIPORTER/ BINDING |
AT3G02520 | Predictedsynthetic growth defect | FSW = 0.0240
| Unknown | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G16030 | Predictedinterologs mappinginterologs mapping | FSW = 0.0257
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT1G35160 | Predictedsynthetic growth defect | FSW = 0.0296
| Unknown | GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G48750 | Predictedbiochemicalinteraction prediction | FSW = 0.0291
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G40370 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0436
| Unknown | GLUTAREDOXIN PUTATIVE |
AT3G18524 | PredictedPhenotypic EnhancementCo-expression | FSW = 0.0733
| Unknown | MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING |
AT1G48050 | Predictedin vivo | FSW = 0.0417
| Unknown | KU80 DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
AT1G63780 | PredictedReconstituted ComplexCo-expression | FSW = 0.0072
| Unknown | IMP4 |
AT4G10710 | Predictedinteraction predictioninterologs mappingAffinity Capture-WesternAffinity Capture-Westerntwo hybridinterologs mappingsynthetic growth defectCo-expression | FSW = 0.0370
| Unknown | SPT16 (GLOBAL TRANSCRIPTION FACTOR C) |
AT4G10670 | Predictedinterologs mappingAffinity Capture-WesternAffinity Capture-Westerninterologs mappingsynthetic growth defecttwo hybrid | FSW = 0.0472
| Unknown | GTC2 |
AT1G30590 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.0172
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT3G06720 | PredictedPhenotypic Suppression | FSW = 0.0164
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT3G33520 | PredictedAffinity Capture-MS | FSW = 0.0212
| Unknown | ATARP6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G08350 | PredictedAffinity Capture-MS | FSW = 0.0223
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT5G60410 | PredictedPhenotypic Suppression | FSW = 0.0117
| Unknown | SIZ1 DNA BINDING / SUMO LIGASE |
AT2G34210 | PredictedAffinity Capture-MS | FSW = 0.0218
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT2G18760 | PredictedSynthetic Lethality | FSW = 0.0139
| Unknown | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G67630 | Predictedtwo hybridin vivoin vivoin vitroin vitroAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1467
| Unknown | POLA2 (DNA POLYMERASE ALPHA 2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT5G66130 | Predictedinterologs mapping | FSW = 0.1430
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT3G25980 | PredictedPhenotypic SuppressionSynthetic RescueCo-expression | FSW = 0.0371
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT1G62430 | PredictedPhenotypic EnhancementSynthetic Rescue | FSW = 0.0408
| Unknown | ATCDS1 PHOSPHATIDATE CYTIDYLYLTRANSFERASE |
AT3G28730 | PredictedAffinity Capture-WesternPhenotypic Enhancementinteraction predictionCo-expression | FSW = 0.0494
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
AT5G63960 | PredictedPhenotypic EnhancementPhenotypic Enhancementin vivoin vitroEnriched domain pairCo-expression | FSW = 0.1449
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G42120 | PredictedAffinity Capture-WesternCo-expression | FSW = 0.0610
| Unknown | POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT5G20850 | PredictedPhenotypic Suppression | FSW = 0.0999
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G08260 | PredictedReconstituted ComplexPhenotypic Enhancementin vitroin vivoEnriched domain pairCo-expression | FSW = 0.1319
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT2G27120 | Predictedin vivoin vitrointeraction predictionEnriched domain pairCo-expression | FSW = 0.1214
| Unknown | TIL2 (TILTED 2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT3G12280 | Predictedin vivoin vitro | FSW = 0.0128
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT3G25100 | Predictedin vitroAffinity Capture-WesternCo-expression | FSW = 0.0642
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT3G54180 | Predictedbiochemical | FSW = 0.0269
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT1G04730 | Predictedinterologs mappingCo-expression | FSW = 0.1108
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G47490 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0615
| Unknown | ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C) RNA BINDING |
AT1G67320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-expression | FSW = 0.3027
| Unknown | DNA PRIMASE LARGE SUBUNIT FAMILY |
AT1G67500 | PredictedPhenotypic Suppression | FSW = 0.0783
| Unknown | ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT2G20980 | PredictedAffinity Capture-Western | FSW = 0.0779
| Unknown | MCM10 |
AT2G34750 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.0192
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT3G42660 | Predictedinteraction predictiontwo hybridsynthetic growth defectPhenotypic EnhancementAffinity Capture-WesternAffinity Capture-Westernsynthetic growth defectSynthetic LethalityReconstituted ComplexCo-expression | FSW = 0.0869
| Unknown | NUCLEOTIDE BINDING |
AT5G10270 | PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.0664
| Unknown | CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE |
AT5G41880 | PredictedCo-purificationColocalizationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction predictionCo-expression | FSW = 0.1319
| Unknown | POLA3 DNA PRIMASE |
AT5G60550 | Predictedinterologs mapping | FSW = 0.0233
| Unknown | GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2) KINASE |
AT1G07340 | PredictedAffinity Capture-MS | FSW = 0.0114
| Unknown | ATSTP2 (SUGAR TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G66740 | Predictedsynthetic growth defectCo-expression | FSW = 0.0428
| Unknown | SGA2 |
AT1G70290 | Predictedbiochemical | FSW = 0.0084
| Unknown | ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT4G16970 | Predictedsynthetic growth defect | FSW = 0.0734
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G21480 | PredictedAffinity Capture-MS | FSW = 0.0127
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G10960 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1043
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G27740 | PredictedSynthetic LethalityCo-expression | FSW = 0.0960
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT4G30870 | PredictedPhenotypic Suppression | FSW = 0.0534
| Unknown | MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING |
AT5G62410 | Predictedinterologs mapping | FSW = 0.0161
| Unknown | SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) TRANSPORTER |
AT1G15920 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0899
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT3G45240 | Predictedinterologs mapping | FSW = 0.0197
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
AT2G31320 | Predictedin vivoin vitroin vitroin vivoCo-expression | FSW = 0.0350
| Unknown | PARP2 (POLY(ADP-RIBOSE) POLYMERASE 2) DNA BINDING / NAD OR NADH BINDING / NAD+ ADP-RIBOSYLTRANSFERASE/ ZINC ION BINDING |
AT1G02690 | PredictedPhenotypic SuppressionCo-expression | FSW = 0.0301
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT2G32070 | Predictedinteraction prediction | FSW = 0.1045
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454