Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G70290 - ( ATTPS8 alphaalpha-trehalose-phosphate synthase (UDP-forming)/ transferase transferring glycosyl groups / trehalose-phosphatase )
64 Proteins interacs with AT1G70290Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33120 | PredictedAffinity Capture-MS | FSW = 0.0181
| Unknown | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT3G09630 | Predictedbiochemical | FSW = 0.0305
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT4G16720 | Predictedbiochemical | FSW = 0.0096
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15A) |
AT1G16240 | Predictedbiochemical | FSW = 0.0251
| Unknown | SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR |
AT3G62870 | Predictedtwo hybrid | FSW = 0.0339
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G01820 | PredictedSynthetic Rescue | FSW = 0.0461
| Unknown | ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G61730 | Predictedbiochemical | FSW = 0.0398
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
AT3G19170 | PredictedSynthetic Rescue | FSW = 0.0510
| Unknown | ATPREP1 (PRESEQUENCE PROTEASE 1) METALLOENDOPEPTIDASE |
AT1G22170 | Predictedbiochemical | FSW = 0.0132
| Unknown | PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
AT5G61410 | Predictedbiochemical | FSW = 0.0126
| Unknown | RPE CATALYTIC/ RIBULOSE-PHOSPHATE 3-EPIMERASE |
AT1G71860 | PredictedSynthetic Rescue | FSW = 0.0270
| Unknown | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
AT5G62880 | PredictedPhenotypic Enhancement | FSW = 0.0365
| Unknown | ARAC10 GTP BINDING |
AT3G05560 | PredictedAffinity Capture-MS | FSW = 0.0118
| Unknown | 60S RIBOSOMAL PROTEIN L22-2 (RPL22B) |
AT5G58800 | PredictedAffinity Capture-MS | FSW = 0.0251
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
AT3G25540 | PredictedAffinity Capture-MS | FSW = 0.0320
| Unknown | LAG1 |
AT3G47960 | PredictedAffinity Capture-MS | FSW = 0.0151
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G79930 | PredictedAffinity Capture-Westerntwo hybridReconstituted Complextwo hybridReconstituted ComplexReconstituted ComplexAffinity Capture-WesternReconstituted ComplexProtein-peptideAffinity Capture-MSPhenotypic Enhancement | FSW = 0.0260
| Unknown | HSP91 ATP BINDING |
AT5G03860 | Predictedbiochemical | FSW = 0.0149
| Unknown | MLS (MALATE SYNTHASE) MALATE SYNTHASE |
AT2G17420 | Predictedbiochemical | FSW = 0.0433
| Unknown | NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) THIOREDOXIN-DISULFIDE REDUCTASE |
AT1G60140 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1927
| Unknown | ATTPS10 (TREHALOSE PHOSPHATE SYNTHASE) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT2G30260 | Predictedbiochemical | FSW = 0.0143
| Unknown | U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT4G12590 | Predictedbiochemical | FSW = 0.0265
| Unknown | UNKNOWN PROTEIN |
AT4G36400 | Predictedbiochemical | FSW = 0.0312
| Unknown | FAD LINKED OXIDASE FAMILY PROTEIN |
AT2G18700 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1751
| Unknown | ATTPS11 TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G13790 | Predictedbiochemical | FSW = 0.0148
| Unknown | ATBFRUCT1 BETA-FRUCTOFURANOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT2G03120 | PredictedAffinity Capture-MSbiochemical | FSW = 0.0298
| Unknown | ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE |
AT1G52300 | PredictedAffinity Capture-MSbiochemical | FSW = 0.0157
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT3G13320 | Predictedbiochemical | FSW = 0.0371
| Unknown | CAX2 (CATION EXCHANGER 2) CALCIUMCATION ANTIPORTER/ CALCIUMHYDROGEN ANTIPORTER |
AT1G06830 | Predictedbiochemical | FSW = 0.0182
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT1G22290 | PredictedAffinity Capture-MS | FSW = 0.0104
| Unknown | 14-3-3 PROTEIN GF14 PUTATIVE (GRF10) |
AT1G27320 | PredictedAffinity Capture-MS | FSW = 0.0149
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT1G34580 | PredictedbiochemicalAffinity Capture-MS | FSW = 0.0542
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G56090 | PredictedAffinity Capture-MS | FSW = 0.0442
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT1G54560 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1115
| Unknown | XIE MOTOR/ PROTEIN BINDING |
AT3G03340 | PredictedAffinity Capture-Western | FSW = 0.0383
| Unknown | UNE6 (UNFERTILIZED EMBRYO SAC 6) |
AT5G20000 | PredictedReconstituted Complex | FSW = 0.0325
| Unknown | 26S PROTEASOME AAA-ATPASE SUBUNIT PUTATIVE |
AT1G77780 | Predictedbiochemical | FSW = 0.0676
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT2G01770 | Predictedbiochemical | FSW = 0.0230
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.0123
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G36060 | Predictedbiochemical | FSW = 0.0221
| Unknown | UBIQUITIN-CONJUGATING ENZYME FAMILY PROTEIN |
AT2G48100 | Predictedbiochemical | FSW = 0.0342
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G11290 | Predictedbiochemical | FSW = 0.0507
| Unknown | UNKNOWN PROTEIN |
AT3G18660 | PredictedAffinity Capture-MS | FSW = 0.0300
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G27110 | Predictedbiochemical | FSW = 0.0143
| Unknown | PEPTIDASE M48 FAMILY PROTEIN |
AT3G61740 | Predictedbiochemical | FSW = 0.0412
| Unknown | SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G04700 | Predictedbiochemical | FSW = 0.0434
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G04950 | PredictedAffinity Capture-MS | FSW = 0.0057
| Unknown | THIOREDOXIN FAMILY PROTEIN |
AT4G17640 | PredictedAffinity Capture-MS | FSW = 0.0133
| Unknown | CKB2 PROTEIN KINASE CK2 REGULATOR |
AT4G17770 | PredictedbiochemicalPhylogenetic profile methodCo-expression | FSW = 0.0692
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT4G21660 | PredictedAffinity Capture-MS | FSW = 0.0095
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
AT4G22530 | Predictedbiochemical | FSW = 0.0146
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT4G32530 | Predictedbiochemical | FSW = 0.0165
| Unknown | VACUOLAR ATP SYNTHASE PUTATIVE / V-ATPASE PUTATIVE |
AT4G37880 | Predictedbiochemical | FSW = 0.0159
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G17000 | Predictedbiochemical | FSW = 0.0131
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G20560 | PredictedAffinity Capture-MS | FSW = 0.0292
| Unknown | BETA-13-GLUCANASE PUTATIVE |
AT5G46410 | Predictedbiochemical | FSW = 0.0680
| Unknown | NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN |
AT5G54960 | Predictedbiochemical | FSW = 0.0204
| Unknown | PDC2 (PYRUVATE DECARBOXYLASE-2) CARBOXY-LYASE/ CATALYTIC/ MAGNESIUM ION BINDING / PYRUVATE DECARBOXYLASE/ THIAMIN PYROPHOSPHATE BINDING |
AT5G61010 | PredictedAffinity Capture-MS | FSW = 0.0186
| Unknown | ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2) PROTEIN BINDING |
AT5G67100 | Predictedbiochemical | FSW = 0.0084
| Unknown | ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE |
AT1G16980 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1042
| Unknown | ATTPS2 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT4G27550 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2304
| Unknown | ATTPS4 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G06410 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1927
| Unknown | ATTPS7 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT1G23870 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1952
| Unknown | ATTPS9 TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT1G68020 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1039
| Unknown | ATTPS6 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454