Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G52300 - ( 60S ribosomal protein L37 (RPL37B) )
85 Proteins interacs with AT1G52300Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09630 | PredictedPhenotypic Suppression | FSW = 0.0522
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT4G21980 | PredictedAffinity Capture-MSAffinity Capture-MSPhenotypic Enhancement | FSW = 0.0357
| Unknown | APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE |
AT5G07090 | PredictedPhenotypic Enhancement | FSW = 0.0432
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4B) |
AT3G26590 | Predictedbiochemical | FSW = 0.0297
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT3G47930 | PredictedAffinity Capture-MS | FSW = 0.0059
| Unknown | ATGLDH (L-GALACTONO-14-LACTONE DEHYDOROGENASE) L-GULONO-14-LACTONE DEHYDROGENASE/ GALACTONOLACTONE DEHYDROGENASE |
AT3G48170 | PredictedPhenotypic Suppression | FSW = 0.0426
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT3G19170 | PredictedAffinity Capture-MS | FSW = 0.0263
| Unknown | ATPREP1 (PRESEQUENCE PROTEASE 1) METALLOENDOPEPTIDASE |
AT3G13580 | PredictedAffinity Capture-MS | FSW = 0.0096
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
AT5G51820 | PredictedPhenotypic Enhancement | FSW = 0.0537
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT5G15450 | PredictedPhenotypic Enhancement | FSW = 0.0898
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G13050 | PredictedAffinity Capture-MS | FSW = 0.0123
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
AT5G06290 | PredictedPhenotypic SuppressionSynthetic Rescue | FSW = 0.0565
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT5G53480 | PredictedSynthetic Rescue | FSW = 0.0282
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT1G45145 | PredictedPhenotypic Enhancement | FSW = 0.0620
| Unknown | ATTRX5 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT5G45420 | PredictedAffinity Capture-MS | FSW = 0.0094
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT2G01630 | PredictedPhenotypic Enhancement | FSW = 0.0620
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN / BETA-13-GLUCANASE PUTATIVE |
AT4G36490 | PredictedAffinity Capture-MS | FSW = 0.1494
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT2G23890 | Predictedtwo hybrid | FSW = 0.0235
| Unknown | 5 NUCLEOTIDASE FAMILY PROTEIN |
AT4G04340 | PredictedPhenotypic Enhancement | FSW = 0.0270
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT3G53870 | Predictedbiochemical | FSW = 0.0151
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT1G76850 | Predictedtwo hybrid | FSW = 0.0213
| Unknown | SEC5A (EXOCYST COMPLEX COMPONENT SEC5) |
AT5G60980 | PredictedAffinity Capture-MS | FSW = 0.0631
| Unknown | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G30050 | PredictedAffinity Capture-MS | FSW = 0.0203
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G28460 | PredictedPhenotypic Suppression | FSW = 0.0467
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G41380 | PredictedAffinity Capture-MS | FSW = 0.0230
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT1G72480 | PredictedAffinity Capture-MS | FSW = 0.0186
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT3G18480 | PredictedSynthetic Lethality | FSW = 0.0676
| Unknown | ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT) |
AT5G20950 | PredictedAffinity Capture-MS | FSW = 0.0096
| Unknown | GLYCOSYL HYDROLASE FAMILY 3 PROTEIN |
AT4G33710 | PredictedPhenotypic Suppression | FSW = 0.0423
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G02730 | PredictedPhenotypic Suppression | FSW = 0.0168
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G54300 | PredictedAffinity Capture-MS | FSW = 0.0052
| Unknown | ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) |
AT1G50110 | PredictedAffinity Capture-MS | FSW = 0.0447
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 6 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 6 (BCAT6) |
AT4G39200 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1285
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT2G42120 | PredictedPhenotypic Enhancement | FSW = 0.0099
| Unknown | POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT2G29540 | PredictedSynthetic Lethality | FSW = 0.0987
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT4G17190 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1030
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G77990 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1035
| Unknown | AST56 SULFATE TRANSMEMBRANE TRANSPORTER |
AT4G34910 | PredictedAffinity Capture-MS | FSW = 0.0106
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH16) |
AT1G10210 | PredictedReconstituted ComplexReconstituted ComplexAffinity Capture-MS | FSW = 0.0724
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G16360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSPhenotypic EnhancementAffinity Capture-Western | FSW = 0.0825
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT1G17130 | PredictedAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSReconstituted ComplexAffinity Capture-MSsynthetic growth defect | FSW = 0.0860
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT1G30220 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0289
| Unknown | INT2 (INOSITOL TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G01930 | PredictedAffinity Capture-MS | FSW = 0.0192
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT1G10090 | PredictedAffinity Capture-MS | FSW = 0.0091
| Unknown | UNKNOWN PROTEIN |
AT1G11660 | PredictedAffinity Capture-MS | FSW = 0.0094
| Unknown | HEAT SHOCK PROTEIN PUTATIVE |
AT1G21370 | PredictedPhenotypic Suppression | FSW = 0.0425
| Unknown | UNKNOWN PROTEIN |
AT1G25155 | PredictedAffinity Capture-MS | FSW = 0.0490
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G26140 | PredictedAffinity Capture-MS | FSW = 0.0155
| Unknown | UNKNOWN PROTEIN |
AT1G27040 | PredictedAffinity Capture-MS | FSW = 0.0551
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G48605 | PredictedAffinity Capture-MS | FSW = 0.0184
| Unknown | ATHAL3B FMN BINDING / ELECTRON CARRIER/ PHOSPHOPANTOTHENOYLCYSTEINE DECARBOXYLASE |
AT1G59580 | PredictedAffinity Capture-MS | FSW = 0.0077
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT1G60680 | PredictedAffinity Capture-MS | FSW = 0.0650
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G66590 | Predictedtwo hybrid | FSW = 0.0627
| Unknown | COX19 FAMILY PROTEIN |
AT1G70290 | PredictedAffinity Capture-MSbiochemical | FSW = 0.0157
| Unknown | ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT1G75290 | PredictedPhenotypic Enhancement | FSW = 0.0505
| Unknown | OXIDOREDUCTASE ACTING ON NADH OR NADPH |
AT2G03410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-Western | FSW = 0.0211
| Unknown | MO25 FAMILY PROTEIN |
AT2G20000 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MS | FSW = 0.0204
| Unknown | HBT (HOBBIT) BINDING |
AT2G20290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSReconstituted Complex | FSW = 0.0919
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT2G20635 | Predictedtwo hybrid | FSW = 0.0297
| Unknown | ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G21730 | PredictedAffinity Capture-MS | FSW = 0.0193
| Unknown | CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT2G24050 | PredictedAffinity Capture-MS | FSW = 0.0284
| Unknown | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN |
AT2G31900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0828
| Unknown | XIF MOTOR |
AT3G45740 | PredictedAffinity Capture-MS | FSW = 0.0114
| Unknown | HYDROLASE FAMILY PROTEIN / HAD-SUPERFAMILY PROTEIN |
AT4G04700 | PredictedAffinity Capture-MS | FSW = 0.0951
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G14240 | Predictedbiochemical | FSW = 0.0182
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
AT4G38250 | PredictedPhenotypic Suppression | FSW = 0.0310
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G05070 | PredictedPhenotypic Enhancement | FSW = 0.0119
| Unknown | ZINC ION BINDING |
AT5G05420 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0392
| Unknown | IMMUNOPHILIN PUTATIVE / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PUTATIVE |
AT5G13860 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MStwo hybridAffinity Capture-WesternReconstituted Complex | FSW = 0.1079
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G19150 | PredictedAffinity Capture-MS | FSW = 0.0108
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G38890 | PredictedPhenotypic Enhancement | FSW = 0.0235
| Unknown | EXORIBONUCLEASE-RELATED |
AT5G67540 | PredictedSynthetic Lethality | FSW = 0.0305
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G09640 | PredictedPhenotypic Enhancement | FSW = 0.0336
| Unknown | APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE |
AT3G12200 | PredictedAffinity Capture-Western | FSW = 0.0784
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G62760 | PredictedReconstituted Complex | FSW = 0.0609
| Unknown | ATGSTF13 GLUTATHIONE TRANSFERASE |
AT4G36070 | PredictedPhenotypic Enhancement | FSW = 0.0290
| Unknown | CPK18 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G15240 | PredictedPhenotypic Enhancement | FSW = 0.0605
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G49970 | PredictedPhenotypic Enhancement | FSW = 0.0891
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G64760 | PredictedPhenotypic Enhancement | FSW = 0.0544
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
AT5G08600 | Predictedtwo hybrid | FSW = 0.0248
| Unknown | U3 RIBONUCLEOPROTEIN (UTP) FAMILY PROTEIN |
AT1G64140 | Predictedtwo hybrid | FSW = 0.0122
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN SPERM CELL MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS LORICRIN-RELATED (TAIRAT5G645501) HAS 2298 BLAST HITS TO 1429 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 1626 FUNGI - 29 PLANTS - 243 VIRUSES - 9 OTHER EUKARYOTES - 349 (SOURCE NCBI BLINK) |
AT1G03070 | Predictedtwo hybrid | FSW = 0.0121
| Unknown | GLUTAMATE BINDING |
AT2G33560 | Predictedtwo hybrid | FSW = 0.0201
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT3G16080 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1238
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37C) |
AT1G15250 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0240
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37A) |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454