Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G06290 - ( 2-Cys Prx B (2-Cysteine peroxiredoxin B) antioxidant/ peroxiredoxin )
91 Proteins interacs with AT5G06290| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G09630
   | Predictedbiochemical | FSW = 0.0124
| Class C:plastid | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
| AT1G23190
| Predictedbiochemical | FSW = 0.0334
| Class C:plastid | PHOSPHOGLUCOMUTASE CYTOPLASMIC PUTATIVE / GLUCOSE PHOSPHOMUTASE PUTATIVE |
| AT5G15200
| Predictedbiochemical | FSW = 0.0066
| Class C:plastid | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
| AT1G07890
| Predictedbiochemical | FSW = 0.0233
| Class C:plastid | APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE |
| AT4G33650
| Predictedinterologs mapping | FSW = 0.0427
| Class C:plastid | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
| AT5G65430
| Predictedbiochemical | FSW = 0.0236
| Class C:plastid | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT5G43530
| Predictedtwo hybrid | FSW = 0.0054
| Class C:plastid | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
| AT1G56190
| Predictedcomigration in non denaturing gel electrophoresis | FSW = 0.0111
| Class C:plastid | PHOSPHOGLYCERATE KINASE PUTATIVE |
| AT5G42130
| PredictedSynthetic Lethality | FSW = 0.0100
| Class C:plastid | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
| AT2G40690
| Predictedpull down | FSW = 0.0426
| Class C:plastid | GLY1 GLYCEROL-3-PHOSPHATE DEHYDROGENASE (NAD+) |
| AT1G15140
| Predictedpull down | FSW = 0.0284
| Class C:plastid | OXIDOREDUCTASE NAD-BINDING DOMAIN-CONTAINING PROTEIN |
| AT5G63890
| Predictedpull down | FSW = 0.0238
| Class C:plastid | ATHDH (HISTIDINOL DEHYDROGENASE) HISTIDINOL DEHYDROGENASE |
| AT5G61410
| Predictedbiochemical | FSW = 0.0090
| Class C:plastid | RPE CATALYTIC/ RIBULOSE-PHOSPHATE 3-EPIMERASE |
| AT1G10070
| PredictedSynthetic RescuebiochemicalbiochemicalAffinity Capture-WesternbiochemicalSynthetic Rescue | FSW = 0.0503
| Class C:plastid | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
| AT1G26160
| Predictedbiochemicalbiochemical | FSW = 0.0483
| Class C:plastid | METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN |
| AT1G48860
| PredictedPhenotypic Enhancement | FSW = 0.0495
| Class C:plastid | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
| AT3G54440
| Predictedpull down | FSW = 0.0152
| Class C:plastid | GLYCOSIDE HYDROLASE FAMILY 2 PROTEIN |
| AT5G53480
| PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0175
| Class C:plastid | IMPORTIN BETA-2 PUTATIVE |
| AT1G15170
| PredictedAffinity Capture-MS | FSW = 0.0392
| Class C:plastid | MATE EFFLUX FAMILY PROTEIN |
| AT5G63980
| PredictedSynthetic Rescue | FSW = 0.0288
| Class C:plastid | SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE |
| AT5G63400
| PredictedSynthetic Lethality | FSW = 0.0702
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
| AT1G22840
| Predictedbiochemical | FSW = 0.0140
| Unknown | CYTC-1 (CYTOCHROME C-1) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
| AT4G34700
| Predictedtwo hybrid | FSW = 0.0344
| Unknown | COMPLEX 1 FAMILY PROTEIN / LVR FAMILY PROTEIN |
| AT5G13450
| Predictedbiochemical | FSW = 0.0161
| Unknown | ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE |
| AT1G71860
| PredictedSynthetic RescuePhenotypic Suppression | FSW = 0.0091
| Unknown | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
| AT4G36490
| Predictedbiochemical | FSW = 0.0356
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
| AT3G04050
| Predictedbiochemical | FSW = 0.0037
| Unknown | PYRUVATE KINASE PUTATIVE |
| AT3G16340
| Predictedbiochemical | FSW = 0.0243
| Unknown | PDR1 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT1G04750
| Predictedbiochemical | FSW = 0.0401
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
| AT2G32670
| Predictedbiochemical | FSW = 0.0522
| Unknown | ATVAMP725 |
| AT2G47000
| PredictedPhenotypic Enhancement | FSW = 0.0258
| Unknown | ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / XENOBIOTIC-TRANSPORTING ATPASE |
| AT4G18800
| PredictedSynthetic Rescue | FSW = 0.0401
| Unknown | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
| AT3G13460
| PredictedSynthetic Lethality | FSW = 0.0189
| Unknown | ECT2 PROTEIN BINDING |
| AT2G44510
| PredictedAffinity Capture-Western | FSW = 0.0445
| Unknown | P21CIP1-BINDING PROTEIN-RELATED |
| AT2G30050
| Predictedbiochemical | FSW = 0.0111
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G21700
| PredictedSynthetic Lethality | FSW = 0.0182
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
| AT4G39160
| Predictedbiochemical | FSW = 0.0040
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
| AT1G60850
| Predictedbiochemical | FSW = 0.0392
| Unknown | ATRPAC42 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
| AT5G47630
| PredictedSynthetic Rescue | FSW = 0.0420
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
| AT2G17270
| Predictedbiochemical | FSW = 0.0229
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
| AT2G18700
| Predictedbiochemical | FSW = 0.0199
| Unknown | ATTPS11 TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
| AT2G35120
| Predictedbiochemical | FSW = 0.0142
| Unknown | GLYCINE CLEAVAGE SYSTEM H PROTEIN MITOCHONDRIAL PUTATIVE |
| AT1G24180
| Predictedtwo hybrid | FSW = 0.0071
| Unknown | IAR4 OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
| AT5G66590
| PredictedSynthetic Lethality | FSW = 0.0155
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
| AT4G33710
| Predictedbiochemical | FSW = 0.0398
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
| AT1G52300
| PredictedPhenotypic SuppressionSynthetic Rescue | FSW = 0.0565
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
| AT5G53350
| Predictedpull down | FSW = 0.0095
| Unknown | CLPX ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT2G17800
| PredictedAffinity Capture-MS | FSW = 0.0026
| Unknown | ARAC1 GTP BINDING |
| AT4G21710
| Predictedbiochemical | FSW = 0.0021
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT1G31170
| Predictedtwo hybrid | FSW = 0.0246
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
| AT1G80420
| Predictedtwo hybrid | FSW = 0.0142
| Unknown | DNA REPAIR PROTEIN PUTATIVE (XRCC1) |
| AT4G02030
| Predictedtwo hybridtwo hybrid | FSW = 0.0213
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S VPS51/VPS67 (INTERPROIPR014812) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SEC5B (TAIRAT1G211701) HAS 386 BLAST HITS TO 358 PROTEINS IN 130 SPECIES ARCHAE - 0 BACTERIA - 5 METAZOA - 171 FUNGI - 64 PLANTS - 54 VIRUSES - 4 OTHER EUKARYOTES - 88 (SOURCE NCBI BLINK) |
| AT1G34770
| Predictedtwo hybrid | FSW = 0.0084
| Unknown | MAGE-8 ANTIGEN-RELATED |
| AT5G57610
| Predictedin vivotwo hybrid | FSW = 0.0199
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT1G10210
| PredictedAffinity Capture-MStwo hybridbiochemicalReconstituted Complex | FSW = 0.0616
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
| AT1G11530
| Predictedbiochemical | FSW = 0.0084
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
| AT1G15240
| Predictedbiochemical | FSW = 0.0382
| Unknown | PHOX (PX) DOMAIN-CONTAINING PROTEIN |
| AT1G23300
| Predictedbiochemical | FSW = 0.0095
| Unknown | MATE EFFLUX FAMILY PROTEIN |
| AT1G29150
| Predictedbiochemical | FSW = 0.0067
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
| AT1G65660
| Predictedbiochemical | FSW = 0.0053
| Unknown | SMP1 (SWELLMAP 1) NUCLEIC ACID BINDING / SINGLE-STRANDED RNA BINDING |
| AT1G74250
| Predictedbiochemical | FSW = 0.0035
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT1G75290
| Predictedbiochemical | FSW = 0.0135
| Unknown | OXIDOREDUCTASE ACTING ON NADH OR NADPH |
| AT1G80530
| Predictedtwo hybridReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MStwo hybridSynthetic Rescue | FSW = 0.0700
| Unknown | NODULIN FAMILY PROTEIN |
| AT2G01770
| Predictedbiochemical | FSW = 0.0166
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
| AT2G03690
| Predictedbiochemical | FSW = 0.0303
| Unknown | COENZYME Q BIOSYNTHESIS COQ4 FAMILY PROTEIN / UBIQUINONE BIOSYNTHESIS COQ4 FAMILY PROTEIN |
| AT2G19540
| Predictedbiochemical | FSW = 0.0059
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT2G34180
| Predictedbiochemical | FSW = 0.0332
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT2G36060
| Predictedbiochemical | FSW = 0.0240
| Unknown | UBIQUITIN-CONJUGATING ENZYME FAMILY PROTEIN |
| AT2G37420
| Predictedbiochemical | FSW = 0.0272
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
| AT2G44065
| Predictedbiochemical | FSW = 0.0088
| Unknown | RIBOSOMAL PROTEIN L2 FAMILY PROTEIN |
| AT3G13060
| Predictedbiochemical | FSW = 0.0215
| Unknown | ECT5 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S YT521-B-LIKE PROTEIN (INTERPROIPR007275) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS ECT2 PROTEIN BINDING (TAIRAT3G134601) HAS 1007 BLAST HITS TO 965 PROTEINS IN 147 SPECIES ARCHAE - 0 BACTERIA - 8 METAZOA - 528 FUNGI - 103 PLANTS - 235 VIRUSES - 0 OTHER EUKARYOTES - 133 (SOURCE NCBI BLINK) |
| AT3G13210
| Predictedbiochemical | FSW = 0.0279
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
| AT3G45190
| Predictedbiochemical | FSW = 0.0247
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
| AT3G47120
| PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT3G48960
| Predictedbiochemical | FSW = 0.0105
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13C) |
| AT3G49880
| Predictedbiochemical | FSW = 0.0188
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
| AT3G57140
| Predictedbiochemical | FSW = 0.0219
| Unknown | PATATIN-RELATED |
| AT3G59790
| Predictedbiochemical | FSW = 0.0117
| Unknown | ATMPK10 MAP KINASE/ KINASE |
| AT3G62770
| PredictedSynthetic Lethality | FSW = 0.0150
| Unknown | ATATG18A |
| AT4G00980
| PredictedAffinity Capture-MS | FSW = 0.0610
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
| AT4G21480
| Predictedbiochemical | FSW = 0.0049
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT4G25950
| PredictedPhenotypic Enhancementbiochemical | FSW = 0.0805
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT4G28070
| Predictedbiochemical | FSW = 0.0113
| Unknown | AFG1-LIKE ATPASE FAMILY PROTEIN |
| AT4G32180
| Predictedbiochemical | FSW = 0.0237
| Unknown | ATPANK2 (PANTOTHENATE KINASE 2) PANTOTHENATE KINASE |
| AT1G16360
| PredictedSynthetic RescueSynthetic RescuePhenotypic Suppression | FSW = 0.0619
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
| AT1G60680
| PredictedPhenotypic Enhancementinterologs mapping | FSW = 0.0698
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT2G20000
| PredictedReconstituted Complex | FSW = 0.0126
| Unknown | HBT (HOBBIT) BINDING |
| AT3G25900
| PredictedPhenotypic Enhancement | FSW = 0.0391
| Unknown | HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE |
| AT5G20340
| PredictedPhenotypic Enhancement | FSW = 0.0457
| Unknown | BG5 (BETA-13-GLUCANASE 5) GLUCAN 13-BETA-GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
| AT5G66620
| Predictedbiochemical | FSW = 0.0278
| Unknown | DAR6 (DA1-RELATED PROTEIN 6) ZINC ION BINDING |
| AT5G67290
| Predictedbiochemical | FSW = 0.0100
| Unknown | FAD-DEPENDENT OXIDOREDUCTASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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