Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G24180 - ( IAR4 oxidoreductase acting on the aldehyde or oxo group of donors disulfide as acceptor / pyruvate dehydrogenase (acetyl-transferring) )
21 Proteins interacs with AT1G24180Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G50850 | Predictedtwo hybridin vivoAffinity Capture-MSAffinity Capture-MStwo hybridEnriched domain pairCo-expression | FSW = 0.1816
| Class C:mitochondrion | MAB1 (MACCI-BOU) CATALYTIC/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT1G54220 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1977
| Class C:mitochondrion | DIHYDROLIPOAMIDE S-ACETYLTRANSFERASE PUTATIVE |
AT3G23990 | Predictedtwo hybrid | FSW = 0.0212
| Class C:mitochondrion | HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING |
AT3G13860 | Predictedtwo hybrid | FSW = 0.0465
| Class C:mitochondrion | HSP60-3A (HEAT SHOCK PROTEIN 60-3A) ATP BINDING / PROTEIN BINDING |
AT1G49630 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2048
| Class C:mitochondrion | ATPREP2 (ARABIDOPSIS THALIANA PRESEQUENCE PROTEASE 2) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ METALLOPEPTIDASE/ ZINC ION BINDING |
AT5G09300 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2238
| Class C:mitochondrion | 2-OXOISOVALERATE DEHYDROGENASE PUTATIVE / 3-METHYL-2-OXOBUTANOATE DEHYDROGENASE PUTATIVE / BRANCHED-CHAIN ALPHA-KETO ACID DEHYDROGENASE E1 ALPHA SUBUNIT PUTATIVE |
AT1G59900 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2081
| Class C:mitochondrion | AT-E1 ALPHA OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT5G06290 | Predictedtwo hybrid | FSW = 0.0071
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT3G11630 | Predictedtwo hybrid | FSW = 0.0080
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT3G43810 | Predictedtwo hybrid | FSW = 0.0065
| Unknown | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT2G01430 | Predictedtwo hybrid | FSW = 0.0395
| Unknown | ATHB17 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17) TRANSCRIPTION FACTOR |
AT2G39740 | Predictedtwo hybrid | FSW = 0.0417
| Unknown | UNKNOWN PROTEIN |
AT5G65260 | Predictedtwo hybrid | FSW = 0.0896
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT2G18390 | Predictedtwo hybridtwo hybrid | FSW = 0.0351
| Unknown | TTN5 (TITAN 5) GTP BINDING / GTPASE |
AT5G21274 | Predictedtwo hybrid | FSW = 0.0093
| Unknown | CAM6 (CALMODULIN 6) CALCIUM ION BINDING |
AT4G26070 | PredictedAffinity Capture-MS | FSW = 0.0247
| Unknown | MEK1 (MAP KINASE/ ERK KINASE 1) MAP KINASE KINASE/ KINASE/ PROTEIN BINDING |
AT1G52360 | PredictedAffinity Capture-MS | FSW = 0.0088
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
AT5G19820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0175
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT3G22590 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0160
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT5G51120 | Predictedtwo hybrid | FSW = 0.0533
| Unknown | PABN1 (POLYADENYLATE-BINDING PROTEIN 1) RNA BINDING / POLY(A) BINDING / PROTEIN BINDING |
AT3G02510 | PredictedGene fusion method | FSW = 0.0278
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454