Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G65260 - ( polyadenylate-binding protein family protein / PABP family protein )

11 Proteins interacs with AT5G65260
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G10350

Experimental

FSW = 0.0645

Unknown

 POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN
AT1G69120

Experimental

FSW = 0.0248

Unknown

 AP1 (APETALA1) DNA BINDING / PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT4G32850

Experimental

FSW = 0.1189

Unknown

 NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING
AT5G58040

Experimental

FSW = 0.3036

Unknown

 ATFIP1[V] (ARABIDOPSIS HOMOLOG OF YEAST FIP1 [V]) RNA BINDING / PROTEIN BINDING
AT5G51120

Experimental

FSW = 0.3150

Unknown

 PABN1 (POLYADENYLATE-BINDING PROTEIN 1) RNA BINDING / POLY(A) BINDING / PROTEIN BINDING
AT1G77180

Predicted

in vivo

in vitro

two hybrid

FSW = 0.0381

Unknown

 CHROMATIN PROTEIN FAMILY
AT1G24180

Predicted

two hybrid

FSW = 0.0896

Unknown

 IAR4 OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)
AT2G31740

Predicted

two hybrid

FSW = 0.2657

Unknown

 METHYLTRANSFERASE
AT3G27700

Predicted

two hybrid

FSW = 0.3456

Unknown

 RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G16950

Predicted

in vitro

FSW = 0.0114

Unknown

 TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER
AT5G49020

Predicted

biochemical

FSW = 0.1426

Unknown

 PRMT4A (PROTEIN ARGININE METHYLTRANSFERASE 4A) [MYELIN BASIC PROTEIN]-ARGININE N-METHYLTRANSFERASE/ HISTONE-ARGININE N-METHYLTRANSFERASE/ METHYLTRANSFERASE/ PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ PROTEIN-ARGININE OMEGA-N ASYMMETRIC METHYLT

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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