Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G51120 - ( PABN1 (POLYADENYLATE-BINDING PROTEIN 1) RNA binding / poly(A) binding / protein binding )

23 Proteins interacs with AT5G51120
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G10350

Experimental

FSW = 0.1280

Unknown

POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN
AT5G58040

Experimental

pull down

two hybrid

FSW = 0.1916

Unknown

ATFIP1[V] (ARABIDOPSIS HOMOLOG OF YEAST FIP1 [V]) RNA BINDING / PROTEIN BINDING
AT4G32850

Experimental

FSW = 0.1000

Unknown

NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING
AT5G65260

Experimental

FSW = 0.3150

Unknown

POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN
AT1G28200

Experimental

two hybrid

FSW = 0.0704

Unknown

FIP1 (FH INTERACTING PROTEIN 1)
AT1G77510

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0220

Unknown

ATPDIL1-2 (PDI-LIKE 1-2) PROTEIN DISULFIDE ISOMERASE
AT1G13440

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0494

Unknown

GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT3G52140Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0508

Unknown

TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT2G21660

Predicted

interaction prediction

FSW = 0.1026

Unknown

CCR2 (COLD CIRCADIAN RHYTHM AND RNA BINDING 2) RNA BINDING / DOUBLE-STRANDED DNA BINDING / SINGLE-STRANDED DNA BINDING
AT3G11964Predicted

Affinity Capture-MS

FSW = 0.0684

Unknown

RNA BINDING
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0032

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G54080

Predicted

interaction prediction

FSW = 0.0932

Unknown

OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE
AT1G76810Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0408

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN
AT1G63810

Predicted

Affinity Capture-MS

FSW = 0.0363

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK)
AT4G25630

Predicted

Affinity Capture-MS

FSW = 0.0340

Unknown

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT5G37720

Predicted

Affinity Capture-MS

FSW = 0.0245

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT1G24180

Predicted

two hybrid

FSW = 0.0533

Unknown

IAR4 OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)
AT3G27700

Predicted

two hybrid

two hybrid

FSW = 0.2222

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT1G49760

Predicted

Affinity Capture-MS

Affinity Capture-Western

interologs mapping

interologs mapping

interaction prediction

FSW = 0.0367

Unknown

PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G67070

Predicted

Affinity Capture-MS

FSW = 0.0784

Unknown

DIN9 (DARK INDUCIBLE 9) MANNOSE-6-PHOSPHATE ISOMERASE
AT3G14100

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0571

Unknown

OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE
AT3G60240

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

synthetic growth defect

interaction prediction

FSW = 0.0708

Unknown

EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT4G34490

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0360

Unknown

ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1) ACTIN BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454