Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G51120 - ( PABN1 (POLYADENYLATE-BINDING PROTEIN 1) RNA binding / poly(A) binding / protein binding )
23 Proteins interacs with AT5G51120Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G10350 | Experimental | FSW = 0.1280
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT5G58040 | Experimentalpull downtwo hybrid | FSW = 0.1916
| Unknown | ATFIP1[V] (ARABIDOPSIS HOMOLOG OF YEAST FIP1 [V]) RNA BINDING / PROTEIN BINDING |
AT4G32850 | Experimental | FSW = 0.1000
| Unknown | NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING |
AT5G65260 | Experimental | FSW = 0.3150
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT1G28200 | Experimentaltwo hybrid | FSW = 0.0704
| Unknown | FIP1 (FH INTERACTING PROTEIN 1) |
AT1G77510 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0220
| Unknown | ATPDIL1-2 (PDI-LIKE 1-2) PROTEIN DISULFIDE ISOMERASE |
AT1G13440 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0494
| Unknown | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT3G52140 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0508
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT2G21660 | Predictedinteraction prediction | FSW = 0.1026
| Unknown | CCR2 (COLD CIRCADIAN RHYTHM AND RNA BINDING 2) RNA BINDING / DOUBLE-STRANDED DNA BINDING / SINGLE-STRANDED DNA BINDING |
AT3G11964 | PredictedAffinity Capture-MS | FSW = 0.0684
| Unknown | RNA BINDING |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0032
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G54080 | Predictedinteraction prediction | FSW = 0.0932
| Unknown | OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE |
AT1G76810 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0408
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN |
AT1G63810 | PredictedAffinity Capture-MS | FSW = 0.0363
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
AT4G25630 | PredictedAffinity Capture-MS | FSW = 0.0340
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0245
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G24180 | Predictedtwo hybrid | FSW = 0.0533
| Unknown | IAR4 OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT3G27700 | Predictedtwo hybridtwo hybrid | FSW = 0.2222
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G49760 | PredictedAffinity Capture-MSAffinity Capture-Westerninterologs mappinginterologs mappinginteraction prediction | FSW = 0.0367
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G67070 | PredictedAffinity Capture-MS | FSW = 0.0784
| Unknown | DIN9 (DARK INDUCIBLE 9) MANNOSE-6-PHOSPHATE ISOMERASE |
AT3G14100 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0571
| Unknown | OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE |
AT3G60240 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappingsynthetic growth defectinteraction prediction | FSW = 0.0708
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT4G34490 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0360
| Unknown | ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1) ACTIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454