Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G54080 - ( oligouridylate-binding protein putative )
31 Proteins interacs with AT1G54080Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G56860 | Experimental | FSW = 0.0935
| Unknown | UBP1 INTERACTING PROTEIN 2A (UBA2A) |
AT4G39080 | Predictedtwo hybrid | FSW = 0.0627
| Class C:plasma membrane | VHA-A3 (VACUOLAR PROTON ATPASE A3) ATPASE |
AT2G21660 | Predictedinteraction prediction | FSW = 0.0611
| Class C:plasma membrane | CCR2 (COLD CIRCADIAN RHYTHM AND RNA BINDING 2) RNA BINDING / DOUBLE-STRANDED DNA BINDING / SINGLE-STRANDED DNA BINDING |
AT2G02800 | PredictedGene fusion method | FSW = 0.1616
| Class C:plasma membrane | APK2B (PROTEIN KINASE 2B) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G12110 | Predictedtwo hybrid | FSW = 0.0036
| Class C:plasma membrane | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G47010 | Predictedinteraction prediction | FSW = 0.0219
| Class C:plasma membrane | LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE |
AT1G53750 | PredictedGene fusion method | FSW = 0.0187
| Class C:plasma membrane | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT2G01350 | Predictedinteraction prediction | FSW = 0.0162
| Unknown | QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE) NICOTINATE-NUCLEOTIDE DIPHOSPHORYLASE (CARBOXYLATING) |
AT3G27740 | PredictedGene fusion method | FSW = 0.0428
| Unknown | CARA (CARBAMOYL PHOSPHATE SYNTHETASE A) CARBAMOYL-PHOSPHATE SYNTHASE (GLUTAMINE-HYDROLYZING)/ CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC |
AT5G19310 | Predictedinteraction prediction | FSW = 0.0107
| Unknown | HOMEOTIC GENE REGULATOR PUTATIVE |
AT5G54910 | Predictedinteraction prediction | FSW = 0.0161
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G20580 | Predictedinteraction prediction | FSW = 0.0174
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT3G53520 | PredictedGene fusion method | FSW = 0.1469
| Unknown | UXS1 (UDP-GLUCURONIC ACID DECARBOXYLASE 1) UDP-GLUCURONATE DECARBOXYLASE/ CATALYTIC |
AT5G52040 | Predictedtwo hybrid | FSW = 0.0256
| Unknown | ATRSP41 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G27380 | Predictedtwo hybridtwo hybrid | FSW = 0.0256
| Unknown | ATEPR1 STRUCTURAL CONSTITUENT OF CELL WALL |
AT1G10930 | Predictedinteraction prediction | FSW = 0.0093
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G04950 | Predictedinteraction prediction | FSW = 0.0069
| Unknown | TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT4G32720 | Predictedinteraction prediction | FSW = 0.0480
| Unknown | ATLA1 (ARABIDOPSIS THALIANA LA PROTEIN 1) RNA BINDING |
AT2G27120 | Predictedinteraction prediction | FSW = 0.0396
| Unknown | TIL2 (TILTED 2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT2G26695 | Predictedinteraction prediction | FSW = 0.0188
| Unknown | BINDING / ZINC ION BINDING |
AT5G51120 | Predictedinteraction prediction | FSW = 0.0932
| Unknown | PABN1 (POLYADENYLATE-BINDING PROTEIN 1) RNA BINDING / POLY(A) BINDING / PROTEIN BINDING |
AT3G60240 | Predictedinteraction prediction | FSW = 0.0341
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT3G14100 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2727
| Unknown | OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE |
AT1G62720 | PredictedGene fusion method | FSW = 0.4141
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G626801) HAS 25425 BLAST HITS TO 6071 PROTEINS IN 187 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 596 FUNGI - 591 PLANTS - 23031 VIRUSES - 0 OTHER EUKARYOTES - 1189 (SOURCE NCBI BLINK) |
AT4G08320 | PredictedGene fusion method | FSW = 0.0202
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT3G44680 | PredictedGene fusion method | FSW = 0.1143
| Unknown | HDA9 (HISTONE DEACETYLASE 9) HISTONE DEACETYLASE |
AT4G25440 | PredictedGene fusion method | FSW = 0.0784
| Unknown | ZFWD1 (ZINC FINGER WD40 REPEAT PROTEIN 1) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT4G00110 | PredictedGene fusion method | FSW = 0.0784
| Unknown | GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3) UDP-GLUCURONATE 4-EPIMERASE/ CATALYTIC |
AT5G54610 | PredictedGene fusion method | FSW = 0.1975
| Unknown | ANK (ANKYRIN) PROTEIN BINDING |
AT1G14370 | PredictedGene fusion method | FSW = 0.0994
| Unknown | APK2A (PROTEIN KINASE 2A) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G14580 | PredictedGene fusion method | FSW = 0.1029
| Unknown | CIPK4 (CBL-INTERACTING PROTEIN KINASE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454