Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G44680 - ( HDA9 (HISTONE DEACETYLASE 9) histone deacetylase )

5 Proteins interacs with AT3G44680
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G63110

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0327

Unknown

HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT1G54080

Predicted

Gene fusion method

FSW = 0.1143

Unknown

OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE
AT4G38130

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0382

Unknown

HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING
AT5G35600

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2622

Unknown

HDA7 (HISTONE DEACETYLASE7) HISTONE DEACETYLASE
AT1G62720

Predicted

Gene fusion method

FSW = 0.2500

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G626801) HAS 25425 BLAST HITS TO 6071 PROTEINS IN 187 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 596 FUNGI - 591 PLANTS - 23031 VIRUSES - 0 OTHER EUKARYOTES - 1189 (SOURCE NCBI BLINK)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454