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AT1G53750 - ( RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPase )

90 Proteins interacs with AT1G53750

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT2G25490	Experimental biochemical	FSW = 0.1959	Class D: nucleus (p = 0.78) cytosol (p = 0.67)	EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G22630	Predicted Co-purification Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western Co-purification	FSW = 0.3028	Class C: plasma membrane	PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G60390	Predicted Affinity Capture-Western	FSW = 0.0323	Class C: plasma membrane	ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT3G48750	Predicted Co-purification Affinity Capture-Western interaction prediction	FSW = 0.0446	Class C: plasma membrane	CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT1G45000	Predicted Affinity Capture-MS Affinity Capture-MS Gene neighbors method Phylogenetic profile method	FSW = 0.3819	Class C: plasma membrane	26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE
AT4G21180	Predicted Affinity Capture-Western	FSW = 0.0198	Class C: plasma membrane	ATERDJ2B HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT5G19990	Predicted Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Phylogenetic profile method	FSW = 0.3120	Class C: plasma membrane	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE
AT1G54080	Predicted Gene fusion method	FSW = 0.0187	Class C: plasma membrane	OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE
AT1G75990	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3585	Class C: plasma membrane	26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3)
AT1G20200	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3864	Class C: plasma membrane	EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR
AT1G04810	Predicted Affinity Capture-MS Affinity Capture-MS Co-purification	FSW = 0.4054	Class C: plasma membrane	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT2G20580	Predicted Reconstituted Complex in vitro Co-purification Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3513	Class C: plasma membrane	RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT2G20140	Predicted in vitro Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Phylogenetic profile method	FSW = 0.3948	Class C: plasma membrane	26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE
AT5G42790	Predicted Affinity Capture-MS	FSW = 0.2347	Class C: plasma membrane	PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G24820	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.4522	Class C: plasma membrane	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7)
AT1G09100	Predicted Affinity Capture-MS Affinity Capture-MS Phylogenetic profile method	FSW = 0.4184	Class C: plasma membrane	RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING
AT2G36380	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS two hybrid Affinity Capture-Western	FSW = 0.1015	Class C: plasma membrane	PDR6 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G65040	Predicted Affinity Capture-Western	FSW = 0.0339	Class C: plasma membrane	PROTEIN BINDING / ZINC ION BINDING
AT3G51260	Predicted co-fractionation Co-fractionation Affinity Capture-MS co-fractionation Co-fractionation Affinity Capture-MS	FSW = 0.2442	Unknown	PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G15180	Predicted Affinity Capture-MS in vitro two hybrid	FSW = 0.0759	Unknown	PROTEASOME-RELATED
AT5G55630	Predicted Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Reconstituted Complex Co-purification co-fractionation Co-fractionation interologs mapping	FSW = 0.1414	Unknown	ATKCO1 CALCIUM-ACTIVATED POTASSIUM CHANNEL/ ION CHANNEL/ OUTWARD RECTIFIER POTASSIUM CHANNEL
AT4G14800	Predicted Affinity Capture-Western Affinity Capture-Western Co-purification Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Co-purification interaction prediction	FSW = 0.3184	Unknown	PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G31300	Predicted Affinity Capture-MS	FSW = 0.1806	Unknown	PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G59280	Predicted Phenotypic Suppression interologs mapping Phenotypic Suppression Synthetic Rescue	FSW = 0.0736	Unknown	TXR1 (THAXTOMIN A RESISTANT 1)
AT4G12610	Predicted in vivo Affinity Capture-MS	FSW = 0.0265	Unknown	TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN
AT2G45300	Predicted Affinity Capture-MS	FSW = 0.0399	Unknown	3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT1G48860	Predicted Affinity Capture-MS	FSW = 0.0297	Unknown	3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE
AT1G06380	Predicted Affinity Capture-Western co-fractionation Co-fractionation	FSW = 0.0043	Unknown	RIBOSOMAL PROTEIN-RELATED
AT4G00520	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0808	Unknown	ACYL-COA THIOESTERASE FAMILY PROTEIN
AT5G08470	Predicted Phenotypic Enhancement	FSW = 0.0115	Unknown	PEX1 (PEROXISOME 1) ATP BINDING / ATPASE/ BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G29960	Predicted Affinity Capture-MS	FSW = 0.0690	Unknown	PEPTIDASE/ SERINE-TYPE PEPTIDASE
AT3G10220	Predicted two hybrid two hybrid	FSW = 0.0225	Unknown	TUBULIN FOLDING COFACTOR B
AT3G05530	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western interaction prediction Phylogenetic profile method	FSW = 0.4215	Unknown	RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING
AT3G58660	Predicted Affinity Capture-Western co-fractionation Co-fractionation	FSW = 0.0040	Unknown	60S RIBOSOMAL PROTEIN-RELATED
AT2G41630	Predicted in vitro in vivo	FSW = 0.0188	Unknown	TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING
AT1G55520	Predicted in vivo	FSW = 0.0333	Unknown	TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT1G55750	Predicted in vivo in vitro	FSW = 0.0174	Unknown	TRANSCRIPTION FACTOR-RELATED
AT2G06210	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0340	Unknown	ELF8 (EARLY FLOWERING 8) BINDING
AT1G18100	Predicted Affinity Capture-MS Affinity Capture-MS Synthetic Rescue Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Synthetic Rescue interologs mapping Phenotypic Enhancement Phenotypic Suppression	FSW = 0.0895	Unknown	E12A11 PHOSPHATIDYLETHANOLAMINE BINDING
AT5G58290	Predicted in vivo Co-purification co-fractionation Co-fractionation Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS in vivo Affinity Capture-MS Co-purification co-fractionation Co-fractionation interaction prediction Phylogenetic profile method	FSW = 0.4430	Unknown	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE
AT5G03340	Predicted Affinity Capture-Western	FSW = 0.0488	Unknown	CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE
AT1G16190	Predicted Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western Co-purification interaction prediction	FSW = 0.2245	Unknown	DNA REPAIR PROTEIN RAD23 PUTATIVE
AT1G16470	Predicted Affinity Capture-Western	FSW = 0.1392	Unknown	PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G38470	Predicted Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western two hybrid Affinity Capture-Western Co-purification Affinity Capture-MS	FSW = 0.1614	Unknown	DNA REPAIR PROTEIN RAD23 PUTATIVE
AT1G19730	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western co-fractionation Co-fractionation	FSW = 0.0633	Unknown	ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT3G54820	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western co-fractionation Co-fractionation	FSW = 0.0623	Unknown	PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) WATER CHANNEL
AT5G37340	Predicted two hybrid	FSW = 0.0321	Unknown	ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN
AT4G19006	Predicted Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.4535	Unknown	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT1G07270	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0294	Unknown	CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B)
AT1G29150	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3116	Unknown	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)
AT1G51710	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2358	Unknown	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G10520	Predicted Affinity Capture-MS	FSW = 0.1928	Unknown	DNA POLYMERASE LAMBDA (POLL)
AT1G64520	Predicted Synthetic Lethality Synthetic Lethality Co-purification Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS interaction prediction	FSW = 0.4009	Unknown	RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE
AT1G79210	Predicted Affinity Capture-Western	FSW = 0.0786	Unknown	20S PROTEASOME ALPHA SUBUNIT B PUTATIVE
AT2G03430	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3502	Unknown	ANKYRIN REPEAT FAMILY PROTEIN
AT2G17190	Predicted Affinity Capture-Western Affinity Capture-Western	FSW = 0.1165	Unknown	UBIQUITIN FAMILY PROTEIN
AT2G27970	Predicted Reconstituted Complex	FSW = 0.0465	Unknown	CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT2G31020	Predicted Affinity Capture-MS	FSW = 0.0084	Unknown	ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT2G32730	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification	FSW = 0.3128	Unknown	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT2G39770	Predicted Affinity Capture-MS	FSW = 0.0543	Unknown	CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT3G03110	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0244	Unknown	XPO1B BINDING / PROTEIN TRANSPORTER
AT3G11270	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3501	Unknown	MEE34 (MATERNAL EFFECT EMBRYO ARREST 34)
AT3G13970	Predicted Affinity Capture-MS interaction prediction	FSW = 0.1083	Unknown	APG12B (AUTOPHAGY 12 B)
AT4G29040	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Phylogenetic profile method	FSW = 0.4201	Unknown	RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE
AT4G38630	Predicted Co-purification Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2322	Unknown	RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G09900	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3850	Unknown	EMB2107 (EMBRYO DEFECTIVE 2107)
AT5G23540	Predicted Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.4252	Unknown	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT5G26110	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0444	Unknown	ATP BINDING / CATALYTIC/ PROTEIN KINASE
AT5G49570	Predicted Affinity Capture-Western	FSW = 0.0378	Unknown	ATPNG1 (ARABIDOPSIS THALIANA PEPTIDE-N-GLYCANASE 1) CATALYTIC/ PEPTIDE-N4-(N-ACETYL-BETA-GLUCOSAMINYL)ASPARAGINE AMIDASE
AT1G67300	Predicted Synthetic Lethality	FSW = 0.0232	Unknown	HEXOSE TRANSPORTER PUTATIVE
AT1G78720	Predicted Affinity Capture-Western	FSW = 0.0479	Unknown	PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE
AT1G78770	Predicted Affinity Capture-Western	FSW = 0.0173	Unknown	CELL DIVISION CYCLE FAMILY PROTEIN
AT1G79730	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0390	Unknown	ELF7 (EARLY FLOWERING 7)
AT1G80460	Predicted Affinity Capture-MS	FSW = 0.0704	Unknown	NHO1 (NONHOST RESISTANCE TO P S PHASEOLICOLA 1) CARBOHYDRATE KINASE/ GLYCEROL KINASE
AT3G48150	Predicted Affinity Capture-Western	FSW = 0.0385	Unknown	APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) BINDING
AT4G24920	Predicted Affinity Capture-Western	FSW = 0.0374	Unknown	PROTEIN TRANSPORT PROTEIN SEC61 GAMMA SUBUNIT PUTATIVE
AT4G34100	Predicted Affinity Capture-Western	FSW = 0.0337	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT5G02310	Predicted synthetic growth defect	FSW = 0.0066	Unknown	PRT6 (PROTEOLYSIS 6) UBIQUITIN-PROTEIN LIGASE
AT5G41190	Predicted Co-purification Affinity Capture-Western	FSW = 0.0174	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT5G43010	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Phylogenetic profile method	FSW = 0.3814	Unknown	RPT4A ATPASE
AT5G61150	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0345	Unknown	VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT1G64750	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.3089	Unknown	ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))
AT1G54210	Predicted Affinity Capture-MS	FSW = 0.1243	Unknown	ATG12A (AUTOPHAGY 12 A) PROTEIN BINDING
AT2G27960	Predicted Reconstituted Complex	FSW = 0.0369	Unknown	CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING
AT5G43210	Predicted two hybrid	FSW = 0.0106	Unknown	ENDO/EXCINUCLEASE AMINO TERMINAL DOMAIN-CONTAINING PROTEIN
AT5G22480	Predicted two hybrid	FSW = 0.0226	Unknown	ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN
AT1G53780	Predicted Gene neighbors method Phylogenetic profile method	FSW = 0.2765	Unknown	ATP BINDING / ATPASE/ HYDROLASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT5G20000	Predicted Phylogenetic profile method	FSW = 0.1250	Unknown	26S PROTEASOME AAA-ATPASE SUBUNIT PUTATIVE
AT5G54610	Predicted Gene fusion method	FSW = 0.0749	Unknown	ANK (ANKYRIN) PROTEIN BINDING
AT1G62720	Predicted Gene fusion method	FSW = 0.0396	Unknown	INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G626801) HAS 25425 BLAST HITS TO 6071 PROTEINS IN 187 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 596 FUNGI - 591 PLANTS - 23031 VIRUSES - 0 OTHER EUKARYOTES - 1189 (SOURCE NCBI BLINK)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT1G53750 - ( RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPase )

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