Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G78770 - ( cell division cycle family protein )
177 Proteins interacs with AT1G78770Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G09590 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.1439
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT4G16660 | Predictedsynthetic growth defect | FSW = 0.2057
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT3G28715 | Predictedsynthetic growth defect | FSW = 0.0512
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT5G10350 | PredictedAffinity Capture-Western | FSW = 0.0892
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT1G07510 | PredictedSynthetic Lethality | FSW = 0.0034
| Unknown | FTSH10 (FTSH PROTEASE 10) ATP BINDING / ATPASE/ METALLOENDOPEPTIDASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / ZINC ION BINDING |
AT5G13450 | PredictedSynthetic Lethality | FSW = 0.0492
| Unknown | ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE |
AT4G29210 | Predictedsynthetic growth defect | FSW = 0.0722
| Unknown | GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4) GAMMA-GLUTAMYLTRANSFERASE/ GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE |
AT5G58060 | PredictedSynthetic Lethality | FSW = 0.0046
| Unknown | YKT61 |
AT1G74560 | PredictedSynthetic Lethality | FSW = 0.1342
| Unknown | NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING |
AT3G22890 | Predictedsynthetic growth defect | FSW = 0.2140
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT5G09660 | Predictedsynthetic growth defect | FSW = 0.1845
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT3G45770 | Predictedsynthetic growth defect | FSW = 0.0196
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT5G65430 | PredictedPhenotypic Enhancement | FSW = 0.0650
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G55920 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.0691
| Unknown | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT1G49630 | Predictedsynthetic growth defect | FSW = 0.0133
| Unknown | ATPREP2 (ARABIDOPSIS THALIANA PRESEQUENCE PROTEASE 2) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ METALLOPEPTIDASE/ ZINC ION BINDING |
AT3G55400 | PredictedPhenotypic Enhancement | FSW = 0.0898
| Unknown | OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT1G48860 | PredictedSynthetic Lethality | FSW = 0.1859
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT1G10070 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0576
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT2G42590 | Predictedinterologs mapping | FSW = 0.0245
| Unknown | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G45145 | PredictedSynthetic Rescue | FSW = 0.0681
| Unknown | ATTRX5 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT5G60540 | PredictedSynthetic Lethality | FSW = 0.2341
| Unknown | PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION |
AT3G48750 | PredictedSynthetic Lethalitybiochemical | FSW = 0.0333
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT4G32360 | Predictedsynthetic growth defect | FSW = 0.0461
| Unknown | NADP ADRENODOXIN-LIKE FERREDOXIN REDUCTASE |
AT1G75170 | PredictedCo-purification | FSW = 0.0483
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT4G23700 | Predictedsynthetic growth defect | FSW = 0.0153
| Unknown | ATCHX17 (CATION/H+ EXCHANGER 17) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT5G47700 | Predictedsynthetic growth defect | FSW = 0.0299
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1C) |
AT1G04750 | PredictedSynthetic LethalitySynthetic Lethalitysynthetic growth defect | FSW = 0.2675
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT1G70730 | Predictedsynthetic growth defect | FSW = 0.0261
| Unknown | PHOSPHOGLUCOMUTASE CYTOPLASMIC PUTATIVE / GLUCOSE PHOSPHOMUTASE PUTATIVE |
AT5G12480 | PredictedSynthetic Lethality | FSW = 0.0054
| Unknown | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G53750 | PredictedAffinity Capture-Western | FSW = 0.0173
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT3G49370 | PredictedPhenotypic Enhancement | FSW = 0.0424
| Unknown | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
AT4G14350 | PredictedPhenotypic EnhancementSynthetic Rescuesynthetic growth defect | FSW = 0.0787
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G33090 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0886
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT2G27530 | Predictedsynthetic growth defect | FSW = 0.0126
| Unknown | PGY1 (PIGGYBACK1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G18800 | PredictedSynthetic Rescuesynthetic growth defect | FSW = 0.1769
| Unknown | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
AT3G20060 | Predictedinterologs mapping | FSW = 0.0195
| Unknown | UBC19 (UBIQUITIN-CONJUGATING ENZYME19) UBIQUITIN-PROTEIN LIGASE |
AT3G60180 | PredictedSynthetic Lethality | FSW = 0.0910
| Unknown | URIDYLATE KINASE PUTATIVE / URIDINE MONOPHOSPHATE KINASE PUTATIVE / UMP KINASE PUTATIVE |
AT2G44680 | Predictedsynthetic growth defect | FSW = 0.0195
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT3G13445 | PredictedPhenotypic Enhancement | FSW = 0.0969
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT3G52250 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1295
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT1G76300 | Predictedsynthetic growth defect | FSW = 0.0748
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
AT3G14120 | Predictedsynthetic growth defect | FSW = 0.0060
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT LOCATED IN NUCLEAR PORE EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEAR PORE PROTEIN 84/107 (INTERPROIPR007252) HAS 207 BLAST HITS TO 206 PROTEINS IN 78 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 123 FUNGI - 57 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 5 (SOURCE NCBI BLINK) |
AT2G40290 | PredictedAffinity Capture-Western | FSW = 0.0441
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT5G25150 | Predictedinterologs mapping | FSW = 0.0158
| Unknown | TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR |
AT2G30160 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethalitysynthetic growth defect | FSW = 0.2047
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT3G18480 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1395
| Unknown | ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT) |
AT5G66590 | PredictedSynthetic Lethality | FSW = 0.0293
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G54840 | Predictedsynthetic growth defect | FSW = 0.1705
| Unknown | ARA6 GTP BINDING / GTPASE |
AT5G05490 | Predictedsynthetic growth defect | FSW = 0.0060
| Unknown | SYN1 (SYNAPTIC 1) |
AT4G39200 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.1906
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT1G16190 | PredictedAffinity Capture-Western | FSW = 0.0102
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT5G10330 | PredictedSynthetic Lethality | FSW = 0.0446
| Unknown | HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE |
AT1G62800 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1948
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT3G25980 | PredictedSynthetic Rescuein vivoin vitroAffinity Capture-WesternCo-expression | FSW = 0.0293
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT1G77990 | Predictedbiochemical | FSW = 0.0400
| Unknown | AST56 SULFATE TRANSMEMBRANE TRANSPORTER |
AT5G40820 | PredictedPhenotypic Enhancement | FSW = 0.0112
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT4G16420 | PredictedSynthetic Lethality | FSW = 0.1102
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G63960 | PredictedAffinity Capture-WesternCo-expression | FSW = 0.0067
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G29540 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0946
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G42810 | Predictedtwo hybridin vitro | FSW = 0.0153
| Unknown | PP52 (PROTEIN PHOSPHATASE 52) PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G05180 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.0922
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT1G12400 | Predictedtwo hybrid | FSW = 0.0063
| Unknown | DNA BINDING |
AT1G06590 | Predictedin vivoCo-expression | FSW = 0.1045
| Unknown | UNKNOWN PROTEIN |
AT2G20635 | Predictedin vivo | FSW = 0.0148
| Unknown | ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G16320 | Predictedtwo hybridin vitroAffinity Capture-Western | FSW = 0.1260
| Unknown | CDC27A BINDING |
AT4G21530 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSco-fractionationCo-fractionation | FSW = 0.1083
| Unknown | NUCLEOTIDE BINDING |
AT5G27080 | Predictedin vitroin vivoin vivoin vitroReconstituted Complex | FSW = 0.0578
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT1G04220 | PredictedSynthetic Lethality | FSW = 0.0127
| Unknown | KCS2 (3-KETOACYL-COA SYNTHASE 2) FATTY ACID ELONGASE |
AT1G09810 | PredictedPhenotypic EnhancementSynthetic Rescue | FSW = 0.0482
| Unknown | ECT11 (EVOLUTIONARILY CONSERVED C-TERMINAL REGION 11) |
AT1G12390 | Predictedsynthetic growth defect | FSW = 0.0373
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G13580 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1698
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G15240 | PredictedSynthetic Lethality | FSW = 0.0365
| Unknown | PHOX (PX) DOMAIN-CONTAINING PROTEIN |
AT1G15440 | Predictedsynthetic growth defect | FSW = 0.0557
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G17720 | PredictedSynthetic Rescue | FSW = 0.0039
| Unknown | ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G20693 | PredictedAffinity Capture-MSAffinity Capture-MSColocalizationPhenotypic Suppression | FSW = 0.3929
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G23280 | PredictedSynthetic Rescue | FSW = 0.0081
| Unknown | MAK16 PROTEIN-RELATED |
AT1G23460 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1539
| Unknown | POLYGALACTURONASE |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.2724
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G25260 | PredictedSynthetic Lethality | FSW = 0.0319
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT1G25500 | PredictedSynthetic Lethality | FSW = 0.0301
| Unknown | CHOLINE TRANSPORTER-RELATED |
AT1G27080 | Predictedsynthetic growth defect | FSW = 0.0495
| Unknown | NRT16 (NITRATE TRANSPORTER 16) LOW AFFINITY NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER |
AT1G33040 | Predictedsynthetic growth defect | FSW = 0.0189
| Unknown | NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) |
AT1G34580 | Predictedsynthetic growth defect | FSW = 0.0910
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G35350 | Predictedsynthetic growth defect | FSW = 0.2642
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G47830 | PredictedPhenotypic EnhancementPhenotypic Enhancementsynthetic growth defect | FSW = 0.2284
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G52500 | PredictedPhenotypic Suppression | FSW = 0.1179
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT1G55300 | Predictedsynthetic growth defect | FSW = 0.1891
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G60680 | Predictedsynthetic growth defect | FSW = 0.1053
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G66520 | PredictedPhenotypic Suppression | FSW = 0.0176
| Unknown | PDE194 (PIGMENT DEFECTIVE 194) CATALYTIC/ FORMYLTETRAHYDROFOLATE DEFORMYLASE/ HYDROXYMETHYL- FORMYL- AND RELATED TRANSFERASE |
AT1G66590 | PredictedSynthetic RescueSynthetic RescueSynthetic RescueSynthetic RescueSynthetic RescueSynthetic Rescuesynthetic growth defect | FSW = 0.2251
| Unknown | COX19 FAMILY PROTEIN |
AT1G68200 | PredictedAffinity Capture-MS | FSW = 0.0121
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT1G68310 | Predictedsynthetic growth defect | FSW = 0.0107
| Unknown | VACUOLAR SORTING SIGNAL BINDING |
AT1G77720 | Predictedinterologs mappingCo-expression | FSW = 0.0246
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G11510 | PredictedSynthetic Lethality | FSW = 0.1437
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
AT1G13950 | Predictedsynthetic growth defect | FSW = 0.0327
| Unknown | ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR |
AT1G26320 | PredictedSynthetic Lethality | FSW = 0.1342
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G44180 | Predictedsynthetic growth defect | FSW = 0.1023
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT2G04660 | Predictedinteraction predictionAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappingCo-expression | FSW = 0.0895
| Unknown | APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G18290 | Predictedinteraction predictionAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0645
| Unknown | ANAPHASE-PROMOTING COMPLEX SUBUNIT 10 FAMILY / APC10 FAMILY |
AT2G20000 | Predictedinteraction predictiontwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethalityco-fractionationCo-fractionationinteraction predictionCo-expression | FSW = 0.1171
| Unknown | HBT (HOBBIT) BINDING |
AT2G27970 | PredictedAffinity Capture-Western | FSW = 0.0340
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G37420 | PredictedSynthetic LethalitySynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.1970
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT2G48100 | PredictedPhenotypic Suppression | FSW = 0.1426
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G02320 | PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.0972
| Unknown | RNA BINDING / TRNA (GUANINE-N2-)-METHYLTRANSFERASE |
AT3G05870 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.0776
| Unknown | APC11 PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT3G09700 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0424
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT3G18660 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic EnhancementSynthetic Lethality | FSW = 0.1705
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G21460 | PredictedSynthetic Lethalitysynthetic growth defectSynthetic Lethality | FSW = 0.1616
| Unknown | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT3G22290 | Predictedsynthetic growth defect | FSW = 0.2399
| Unknown | UNKNOWN PROTEIN |
AT3G24010 | PredictedSynthetic Lethality | FSW = 0.2064
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G25900 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2130
| Unknown | HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE |
AT3G27110 | PredictedSynthetic Rescue | FSW = 0.0140
| Unknown | PEPTIDASE M48 FAMILY PROTEIN |
AT3G45240 | PredictedPhenotypic Suppressionsynthetic growth defect | FSW = 0.1768
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
AT3G47290 | PredictedPhenotypic Enhancement | FSW = 0.1160
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT3G47610 | Predictedsynthetic growth defect | FSW = 0.1111
| Unknown | TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT3G48150 | Predictedinteraction predictiontwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappingCo-expression | FSW = 0.0777
| Unknown | APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) BINDING |
AT3G53030 | PredictedSynthetic Lethality | FSW = 0.1930
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT4G04695 | PredictedPhenotypic Enhancement | FSW = 0.1222
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G10130 | PredictedPhenotypic Enhancement | FSW = 0.0272
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT4G11920 | PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.0446
| Unknown | CCS52A2 SIGNAL TRANSDUCER |
AT4G15410 | PredictedPhenotypic Enhancement | FSW = 0.0391
| Unknown | PUX5 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B PRIME GAMMA) PROTEIN BINDING |
AT4G15770 | PredictedSynthetic LethalityCo-expression | FSW = 0.0093
| Unknown | RNA BINDING / PROTEIN BINDING |
AT4G21490 | Predictedsynthetic growth defect | FSW = 0.2518
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G24160 | Predictedtwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexAffinity Capture-MS | FSW = 0.1066
| Unknown | HYDROLASE ALPHA/BETA FOLD FAMILY PROTEIN |
AT4G27130 | PredictedSynthetic Lethality | FSW = 0.2718
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT4G30870 | PredictedAffinity Capture-MS | FSW = 0.0042
| Unknown | MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING |
AT4G34370 | PredictedPhenotypic Enhancement | FSW = 0.0377
| Unknown | ARI1 (ARIADNE) PROTEIN BINDING / ZINC ION BINDING |
AT5G01330 | Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.0208
| Unknown | PDC3 (PYRUVATE DECARBOXYLASE-3) CARBOXY-LYASE/ CATALYTIC/ MAGNESIUM ION BINDING / PYRUVATE DECARBOXYLASE/ THIAMIN PYROPHOSPHATE BINDING / TRANSFERASE |
AT5G06600 | PredictedPhenotypic Suppression | FSW = 0.0628
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT5G11500 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0705
| Unknown | UNKNOWN PROTEIN |
AT5G14060 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethalitysynthetic growth defect | FSW = 0.1794
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
AT5G16170 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.1563
| Unknown | UNKNOWN PROTEIN |
AT5G16980 | Predictedsynthetic growth defect | FSW = 0.2642
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G17860 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1176
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
AT5G26250 | PredictedPhenotypic EnhancementPhenotypic Enhancementsynthetic growth defect | FSW = 0.1085
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT5G45620 | Predictedsynthetic growth defect | FSW = 0.2952
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G58180 | PredictedPhenotypic Enhancement | FSW = 0.0551
| Unknown | ATYKT62 |
AT1G79820 | PredictedPhenotypic Suppression | FSW = 0.0084
| Unknown | SGB1 (SUPPRESSOR OF G PROTEIN BETA1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT2G03130 | Predictedsynthetic growth defect | FSW = 0.2320
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT2G24960 | Predictedsynthetic growth defect | FSW = 0.2002
| Unknown | UNKNOWN PROTEIN |
AT2G25280 | PredictedSynthetic Lethality | FSW = 0.0797
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MEDIATOR OF ERBB2-DRIVEN CELL MOTILITY (MEMO) RELATED (INTERPROIPR002737) HAS 742 BLAST HITS TO 742 PROTEINS IN 323 SPECIES ARCHAE - 138 BACTERIA - 240 METAZOA - 132 FUNGI - 82 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 124 (SOURCE NCBI BLINK) |
AT2G30800 | Predictedsynthetic growth defect | FSW = 0.0659
| Unknown | HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM) ATP BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G37925 | Predictedsynthetic growth defect | FSW = 0.0492
| Unknown | COPT4 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT3G05960 | PredictedSynthetic Lethality | FSW = 0.0179
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G06460 | Predictedsynthetic growth defect | FSW = 0.0288
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G06470 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.0685
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G06483 | PredictedAffinity Capture-Western | FSW = 0.1552
| Unknown | PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE |
AT3G18860 | PredictedSynthetic Lethality | FSW = 0.0180
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G45190 | Predictedsynthetic growth defect | FSW = 0.0195
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
AT3G60860 | Predictedsynthetic growth defect | FSW = 0.0129
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT4G00800 | PredictedPhenotypic Enhancement | FSW = 0.2278
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G04885 | PredictedSynthetic Lethality | FSW = 0.0098
| Unknown | PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING |
AT4G13020 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1449
| Unknown | MHK ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G19645 | PredictedPhenotypic Suppression | FSW = 0.0861
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT4G32180 | Predictedsynthetic growth defect | FSW = 0.0124
| Unknown | ATPANK2 (PANTOTHENATE KINASE 2) PANTOTHENATE KINASE |
AT4G33950 | Predictedsynthetic growth defect | FSW = 0.0161
| Unknown | OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE |
AT4G36050 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1687
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT4G36070 | PredictedPhenotypic Enhancement | FSW = 0.0505
| Unknown | CPK18 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G01770 | PredictedSynthetic RescueSynthetic RescuePhenotypic Enhancement | FSW = 0.2265
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G02560 | PredictedSynthetic Lethality | FSW = 0.0044
| Unknown | HTA12 DNA BINDING |
AT5G14070 | Predictedsynthetic growth defect | FSW = 0.0207
| Unknown | ROXY2 ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT5G14180 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1018
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G24410 | Predictedsynthetic growth defect | FSW = 0.0082
| Unknown | GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED |
AT5G44830 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1947
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT5G49930 | Predictedsynthetic growth defect | FSW = 0.0481
| Unknown | EMB1441 (EMBRYO DEFECTIVE 1441) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G67540 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1239
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT1G20610 | Predictedinterologs mapping | FSW = 0.0241
| Unknown | CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT4G33270 | PredictedSynthetic LethalitySynthetic RescueAffinity Capture-Western | FSW = 0.0885
| Unknown | CDC201 SIGNAL TRANSDUCER |
AT4G38630 | PredictedAffinity Capture-Western | FSW = 0.0065
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G05560 | Predictedco-fractionationCo-fractionationAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0915
| Unknown | EMB2771 (EMBRYO DEFECTIVE 2771) UBIQUITIN-PROTEIN LIGASE |
AT2G39840 | PredictedSynthetic Lethality | FSW = 0.0077
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G17570 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0058
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT2G27960 | PredictedAffinity Capture-Western | FSW = 0.0296
| Unknown | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
AT4G33260 | Predictedin vivoin vitroin vitroin vivo | FSW = 0.0525
| Unknown | CDC202 SIGNAL TRANSDUCER |
AT2G33560 | Predictedin vivo | FSW = 0.0870
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT5G39770 | Predictedinteraction prediction | FSW = 0.0032
| Unknown | DNA BINDING / ENDONUCLEASE/ NUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING |
AT1G07710 | PredictedGene fusion method | FSW = 0.0060
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454