Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G12390 - ( cornichon family protein )
14 Proteins interacs with AT1G12390Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G09660 | PredictedAffinity Capture-MS | FSW = 0.0288
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT1G10070 | PredictedbiochemicalReconstituted Complexbiochemical | FSW = 0.0493
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT5G62880 | PredictedAffinity Capture-MS | FSW = 0.0105
| Unknown | ARAC10 GTP BINDING |
AT3G06100 | PredictedReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted Complex | FSW = 0.0618
| Unknown | NIP71 (NOD26-LIKE INTRINSIC PROTEIN 71) WATER CHANNEL |
AT1G10210 | Predictedinterologs mappingbiochemical | FSW = 0.0237
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G78770 | Predictedsynthetic growth defect | FSW = 0.0373
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT4G25950 | PredictedAffinity Capture-Western | FSW = 0.0474
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G55300 | PredictedAffinity Capture-MS | FSW = 0.0244
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT2G31900 | PredictedAffinity Capture-MS | FSW = 0.0323
| Unknown | XIF MOTOR |
AT4G00800 | PredictedPhenotypic Enhancement | FSW = 0.0704
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT1G62880 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile method | FSW = 0.0485
| Unknown | CORNICHON FAMILY PROTEIN |
AT4G12090 | PredictedPhylogenetic profile method | FSW = 0.3333
| Unknown | CORNICHON FAMILY PROTEIN |
AT3G12180 | PredictedPhylogenetic profile method | FSW = 0.1282
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G12340 | PredictedPhylogenetic profile method | FSW = 0.1220
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454