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AT5G09660 - ( PMDH2 (peroxisomal NAD-malate dehydrogenase 2) malate dehydrogenase )

112 Proteins interacs with AT5G09660

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT2G22780	Predicted Enriched domain pair Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.0378	Class C: plastid peroxisome	PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT3G48170	Predicted Phenotypic Enhancement	FSW = 0.1431	Class C: plastid peroxisome	ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT1G23310	Predicted Affinity Capture-MS	FSW = 0.0046	Class C: plastid peroxisome	GGT1 (GLUTAMATEGLYOXYLATE AMINOTRANSFERASE) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE
AT2G33210	Predicted molecular sieving	FSW = 0.0065	Class C: plastid	HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING
AT3G47520	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.0824	Class C: plastid	MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT1G20260	Predicted Phenotypic Enhancement	FSW = 0.1520	Class C: plastid	HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G22890	Predicted synthetic growth defect Synthetic Lethality	FSW = 0.1871	Class C: plastid	APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP)
AT5G19830	Predicted Phenotypic Enhancement	FSW = 0.0460	Class C: plastid	AMINOACYL-TRNA HYDROLASE
AT1G74710	Predicted synthetic growth defect	FSW = 0.1850	Class C: plastid	ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT1G77750	Predicted Phenotypic Enhancement	FSW = 0.0605	Class C: plastid	30S RIBOSOMAL PROTEIN S13 CHLOROPLAST PUTATIVE
AT3G58610	Predicted Synthetic Rescue Synthetic Rescue Synthetic Rescue	FSW = 0.2437	Class C: plastid	KETOL-ACID REDUCTOISOMERASE
AT4G04350	Predicted comigration in non denaturing gel electrophoresis	FSW = 0.0210	Class C: plastid	EMB2369 (EMBRYO DEFECTIVE 2369) ATP BINDING / AMINOACYL-TRNA LIGASE/ LEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT5G15450	Predicted synthetic growth defect	FSW = 0.1973	Class C: plastid	CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G64190	Predicted Phenotypic Enhancement	FSW = 0.1467	Class C: plastid	6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN
AT2G43030	Predicted pull down	FSW = 0.0994	Class C: plastid	RIBOSOMAL PROTEIN L3 FAMILY PROTEIN
AT5G35360	Predicted in vitro	FSW = 0.0163	Class C: plastid	CAC2 ACETYL-COA CARBOXYLASE/ BIOTIN CARBOXYLASE
AT1G48860	Predicted Phenotypic Enhancement	FSW = 0.1738	Class C: plastid	3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE
ATCG00380	Predicted pull down	FSW = 0.0020	Class C: plastid	CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4
AT2G33120	Predicted Affinity Capture-MS	FSW = 0.0258	Unknown	SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)
AT2G30970	Predicted in vitro Affinity Capture-MS	FSW = 0.0195	Unknown	ASP1 (ASPARTATE AMINOTRANSFERASE 1) L-ASPARTATE2-OXOGLUTARATE AMINOTRANSFERASE
AT1G15880	Predicted Affinity Capture-Western	FSW = 0.0817	Unknown	GOS11 (GOLGI SNARE 11) SNARE BINDING
AT2G45170	Predicted Phenotypic Enhancement	FSW = 0.1352	Unknown	ATATG8E MICROTUBULE BINDING
AT4G21980	Predicted Phenotypic Suppression	FSW = 0.0435	Unknown	APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE
AT1G11320	Predicted two hybrid	FSW = 0.0137	Unknown	UNKNOWN PROTEIN
AT2G21540	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0636	Unknown	SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER
AT4G17260	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.0458	Unknown	L-LACTATE DEHYDROGENASE PUTATIVE
AT1G04750	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Synthetic Lethality Affinity Capture-Western Affinity Capture-MS Phenotypic Enhancement	FSW = 0.3574	Unknown	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT5G26340	Predicted Phenotypic Enhancement	FSW = 0.0293	Unknown	MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT5G47700	Predicted synthetic growth defect	FSW = 0.0678	Unknown	60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1C)
AT1G21700	Predicted synthetic growth defect Phenotypic Suppression	FSW = 0.1884	Unknown	ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT5G44500	Predicted two hybrid	FSW = 0.0065	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE
AT3G33520	Predicted Affinity Capture-MS	FSW = 0.0054	Unknown	ATARP6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G72560	Predicted Affinity Capture-MS	FSW = 0.0482	Unknown	PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING
AT4G18880	Predicted synthetic growth defect	FSW = 0.0072	Unknown	AT-HSFA4A DNA BINDING / TRANSCRIPTION FACTOR
AT3G15020	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.0614	Unknown	MALATE DEHYDROGENASE (NAD) MITOCHONDRIAL PUTATIVE
AT3G60100	Predicted in vitro in vitro Affinity Capture-MS	FSW = 0.0199	Unknown	CSY5 (CITRATE SYNTHASE 5) CITRATE (SI)-SYNTHASE/ TRANSFERASE TRANSFERRING ACYL GROUPS ACYL GROUPS CONVERTED INTO ALKYL ON TRANSFER
AT5G47630	Predicted Phenotypic Enhancement	FSW = 0.0831	Unknown	MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING
AT5G37510	Predicted in vitro Affinity Capture-MS	FSW = 0.0288	Unknown	EMB1467 (EMBRYO DEFECTIVE 1467) NADH DEHYDROGENASE (UBIQUINONE)/ NADH DEHYDROGENASE/ ELECTRON CARRIER/ IRON-SULFUR CLUSTER BINDING / OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON NADH OR NADPH
AT1G53240	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.0781	Unknown	MALATE DEHYDROGENASE (NAD) MITOCHONDRIAL
AT5G24090	Predicted Synthetic Lethality	FSW = 0.1496	Unknown	ACIDIC ENDOCHITINASE (CHIB1)
AT4G30320	Predicted synthetic growth defect	FSW = 0.0207	Unknown	ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT4G33710	Predicted Affinity Capture-MS	FSW = 0.0791	Unknown	PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT3G54840	Predicted Phenotypic Enhancement	FSW = 0.2327	Unknown	ARA6 GTP BINDING / GTPASE
AT3G02560	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.0454	Unknown	40S RIBOSOMAL PROTEIN S7 (RPS7B)
AT3G13900	Predicted Phenotypic Enhancement	FSW = 0.1192	Unknown	ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM
AT1G62800	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.2323	Unknown	ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS
AT4G27070	Predicted Affinity Capture-MS	FSW = 0.0990	Unknown	TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE
AT4G15900	Predicted two hybrid	FSW = 0.0106	Unknown	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G49060	Predicted Phenotypic Enhancement	FSW = 0.0544	Unknown	DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT4G17190	Predicted synthetic growth defect	FSW = 0.1743	Unknown	FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G05180	Predicted Phenotypic Enhancement	FSW = 0.1366	Unknown	AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME
AT1G77990	Predicted Affinity Capture-MS	FSW = 0.1150	Unknown	AST56 SULFATE TRANSMEMBRANE TRANSPORTER
AT1G09270	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.0951	Unknown	IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER
AT1G13580	Predicted Phenotypic Enhancement	FSW = 0.1144	Unknown	LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)
AT1G20693	Predicted synthetic growth defect	FSW = 0.2155	Unknown	HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G21370	Predicted Synthetic Lethality	FSW = 0.2133	Unknown	UNKNOWN PROTEIN
AT1G25155	Predicted synthetic growth defect	FSW = 0.2249	Unknown	ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G35350	Predicted synthetic growth defect Synthetic Lethality	FSW = 0.3610	Unknown	LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK)
AT1G44180	Predicted synthetic growth defect two hybrid Affinity Capture-Western	FSW = 0.2289	Unknown	AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE
AT1G47830	Predicted Affinity Capture-Western interologs mapping two hybrid two hybrid two hybrid Reconstituted Complex two hybrid Synthetic Rescue Reconstituted Complex Reconstituted Complex Reconstituted Complex Reconstituted Complex Synthetic Rescue Phenotypic Suppression interologs mapping	FSW = 0.4262	Unknown	CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE
AT1G60680	Predicted synthetic growth defect	FSW = 0.1548	Unknown	ALDO/KETO REDUCTASE FAMILY PROTEIN
AT1G66590	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality synthetic growth defect Synthetic Lethality Synthetic Lethality Synthetic Lethality synthetic growth defect Phenotypic Enhancement	FSW = 0.2873	Unknown	COX19 FAMILY PROTEIN
AT1G78770	Predicted synthetic growth defect	FSW = 0.1845	Unknown	CELL DIVISION CYCLE FAMILY PROTEIN
AT2G03250	Predicted synthetic growth defect	FSW = 0.1890	Unknown	EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN
AT2G20290	Predicted Affinity Capture-MS	FSW = 0.0898	Unknown	XIG MOTOR/ PROTEIN BINDING
AT2G24960	Predicted synthetic growth defect	FSW = 0.1860	Unknown	UNKNOWN PROTEIN
AT2G31900	Predicted Affinity Capture-MS	FSW = 0.0950	Unknown	XIF MOTOR
AT3G02320	Predicted Synthetic Lethality	FSW = 0.1465	Unknown	RNA BINDING / TRNA (GUANINE-N2-)-METHYLTRANSFERASE
AT3G12200	Predicted Affinity Capture-MS	FSW = 0.1797	Unknown	ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G18660	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.1203	Unknown	PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G18850	Predicted Phenotypic Enhancement	FSW = 0.0927	Unknown	LPAT5 ACYLTRANSFERASE
AT3G18860	Predicted two hybrid Affinity Capture-Western	FSW = 0.0373	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G21460	Predicted Synthetic Lethality	FSW = 0.1852	Unknown	ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE
AT3G22290	Predicted synthetic growth defect Synthetic Lethality	FSW = 0.3567	Unknown	UNKNOWN PROTEIN
AT3G24010	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.2161	Unknown	ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G25900	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.2567	Unknown	HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE
AT3G45240	Predicted synthetic growth defect Synthetic Lethality	FSW = 0.2940	Unknown	GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE
AT3G53030	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.2014	Unknown	SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE
AT4G22140	Predicted synthetic growth defect	FSW = 0.0790	Unknown	DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G27130	Predicted synthetic growth defect Synthetic Lethality	FSW = 0.3582	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT4G29580	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.2797	Unknown	CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE
AT4G30540	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0282	Unknown	GLUTAMINE AMIDOTRANSFERASE CLASS-I DOMAIN-CONTAINING PROTEIN
AT4G36050	Predicted Phenotypic Enhancement	FSW = 0.1649	Unknown	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT5G01770	Predicted Phenotypic Enhancement	FSW = 0.2789	Unknown	RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING
AT1G11510	Predicted synthetic growth defect	FSW = 0.2224	Unknown	DNA-BINDING STOREKEEPER PROTEIN-RELATED
AT1G12390	Predicted Affinity Capture-MS	FSW = 0.0288	Unknown	CORNICHON FAMILY PROTEIN
AT1G19750	Predicted Phenotypic Enhancement	FSW = 0.0470	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G26320	Predicted Phenotypic Enhancement	FSW = 0.0846	Unknown	NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT1G27040	Predicted Phenotypic Enhancement	FSW = 0.1509	Unknown	NITRATE TRANSPORTER PUTATIVE
AT1G31170	Predicted Phenotypic Enhancement	FSW = 0.0709	Unknown	SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS
AT2G23820	Predicted Phenotypic Enhancement	FSW = 0.1352	Unknown	METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN
AT2G27340	Predicted Phenotypic Enhancement	FSW = 0.0525	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK)
AT3G01100	Predicted Phenotypic Enhancement	FSW = 0.1240	Unknown	HYP1 (HYPOTHETICAL PROTEIN 1)
AT3G05960	Predicted Affinity Capture-MS	FSW = 0.0478	Unknown	STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G11240	Predicted Phenotypic Enhancement	FSW = 0.1374	Unknown	ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE
AT4G21490	Predicted Phenotypic Suppression	FSW = 0.3732	Unknown	NDB3 NADH DEHYDROGENASE
AT4G26510	Predicted Affinity Capture-Western	FSW = 0.0476	Unknown	ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE
AT4G38250	Predicted Phenotypic Enhancement	FSW = 0.0823	Unknown	AMINO ACID TRANSPORTER FAMILY PROTEIN
AT5G04800	Predicted Phenotypic Enhancement	FSW = 0.1602	Unknown	40S RIBOSOMAL PROTEIN S17 (RPS17D)
AT5G16170	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.2418	Unknown	UNKNOWN PROTEIN
AT5G17860	Predicted interologs mapping	FSW = 0.2815	Unknown	CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER
AT5G22480	Predicted Affinity Capture-Western co-fractionation Co-fractionation	FSW = 0.0122	Unknown	ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN
AT5G24840	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Phenotypic Enhancement Affinity Capture-Western	FSW = 0.0363	Unknown	TRNA (GUANINE-N7-)-METHYLTRANSFERASE
AT5G41700	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS two hybrid Affinity Capture-Western	FSW = 0.1051	Unknown	UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G42720	Predicted Phenotypic Enhancement	FSW = 0.1327	Unknown	GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT5G45620	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.3321	Unknown	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT5G60340	Predicted interologs mapping Synthetic Rescue	FSW = 0.0340	Unknown	MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN
AT5G61010	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1280	Unknown	ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2) PROTEIN BINDING
AT5G13860	Predicted Affinity Capture-MS	FSW = 0.1665	Unknown	ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE
AT5G20340	Predicted Phenotypic Enhancement	FSW = 0.2336	Unknown	BG5 (BETA-13-GLUCANASE 5) GLUCAN 13-BETA-GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT5G49970	Predicted synthetic growth defect	FSW = 0.2200	Unknown	ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE
AT5G64760	Predicted synthetic growth defect	FSW = 0.1401	Unknown	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT5G09660 - ( PMDH2 (peroxisomal NAD-malate dehydrogenase 2) malate dehydrogenase )

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