Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G19830 - ( aminoacyl-tRNA hydrolase )
37 Proteins interacs with AT5G19830Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G09660 | PredictedPhenotypic Enhancement | FSW = 0.0460
| Class C:plastid | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT3G58610 | PredictedPhenotypic Enhancement | FSW = 0.1050
| Class C:plastid | KETOL-ACID REDUCTOISOMERASE |
AT5G51820 | PredictedPhenotypic Enhancement | FSW = 0.0237
| Class C:plastid | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT5G03650 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0606
| Class C:plastid | SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME |
AT3G17390 | PredictedAffinity Capture-MS | FSW = 0.0093
| Class C:nucleus | MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE |
AT5G59960 | Predictedtwo hybrid | FSW = 0.0172
| Class C:nucleus | UNKNOWN PROTEIN |
AT1G21700 | PredictedAffinity Capture-Westerntwo hybridPhenotypic Enhancement | FSW = 0.0485
| Class C:nucleus | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT3G66656 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0564
| Class C:nucleus | AGL91 TRANSCRIPTION FACTOR |
AT3G45780 | PredictedAffinity Capture-MS | FSW = 0.0163
| Unknown | PHOT1 (PHOTOTROPIN 1) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT3G25800 | Predictedtwo hybrid | FSW = 0.0149
| Unknown | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT4G02050 | PredictedAffinity Capture-MS | FSW = 0.0114
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT4G34270 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0211
| Unknown | TIP41-LIKE FAMILY PROTEIN |
AT4G39200 | PredictedAffinity Capture-MS | FSW = 0.0466
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT1G17810 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0605
| Unknown | BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL |
AT1G74320 | PredictedAffinity Capture-MS | FSW = 0.0160
| Unknown | CHOLINE KINASE PUTATIVE |
AT2G31900 | PredictedAffinity Capture-MS | FSW = 0.0660
| Unknown | XIF MOTOR |
AT2G42005 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.0726
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT2G44530 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0564
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE PUTATIVE / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE PUTATIVE |
AT3G03773 | PredictedCo-purification | FSW = 0.1385
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S CS DOMAIN (INTERPROIPR007052) HSP20-LIKE CHAPERONE (INTERPROIPR008978) CS (INTERPROIPR017447) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS GLYCINE-RICH PROTEIN (TAIRAT4G024502) HAS 482 BLAST HITS TO 482 PROTEINS IN 157 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 241 FUNGI - 87 PLANTS - 64 VIRUSES - 0 OTHER EUKARYOTES - 90 (SOURCE NCBI BLINK) |
AT3G09700 | PredictedCo-purificationAffinity Capture-WesternCo-purificationCo-purificationAffinity Capture-Westerntwo hybridAffinity Capture-WesternAffinity Capture-MSReconstituted Complexco-fractionationCo-fractionation | FSW = 0.1742
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT3G12200 | PredictedAffinity Capture-MS | FSW = 0.0460
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G24830 | PredictedAffinity Capture-MS | FSW = 0.0038
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
AT3G27440 | PredictedAffinity Capture-MS | FSW = 0.0461
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT1G27080 | Predictedtwo hybrid | FSW = 0.0114
| Unknown | NRT16 (NITRATE TRANSPORTER 16) LOW AFFINITY NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER |
AT1G68530 | PredictedPhenotypic Suppression | FSW = 0.0412
| Unknown | KCS6 (3-KETOACYL-COA SYNTHASE 6) CATALYTIC/ TRANSFERASE TRANSFERRING ACYL GROUPS OTHER THAN AMINO-ACYL GROUPS |
AT1G80500 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0503
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK) |
AT2G37670 | PredictedPhenotypic Enhancement | FSW = 0.0693
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT2G48100 | PredictedSynthetic Lethality | FSW = 0.0346
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G46320 | PredictedPhenotypic Enhancement | FSW = 0.0175
| Unknown | HISTONE H4 |
AT3G58560 | Predictedsynthetic growth defect | FSW = 0.0063
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT3G59540 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.0457
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G29580 | PredictedPhenotypic Enhancement | FSW = 0.0358
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT5G04800 | PredictedPhenotypic Suppression | FSW = 0.0625
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT5G10960 | Predictedsynthetic growth defect | FSW = 0.0085
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G26250 | PredictedPhenotypic Enhancement | FSW = 0.0294
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT5G59490 | PredictedAffinity Capture-MS | FSW = 0.0125
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT5G16140 | PredictedPhylogenetic profile method | FSW = 0.0527
| Unknown | PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454