Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G09700 - ( DNAJ heat shock N-terminal domain-containing protein )
17 Proteins interacs with AT3G09700Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G15710 | PredictedPhenotypic Enhancement | FSW = 0.0504
| Unknown | SIGNAL PEPTIDASE PUTATIVE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0081
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G10350 | PredictedPhenotypic Enhancement | FSW = 0.0504
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT5G19830 | PredictedCo-purificationAffinity Capture-WesternCo-purificationCo-purificationAffinity Capture-Westerntwo hybridAffinity Capture-WesternAffinity Capture-MSReconstituted Complexco-fractionationCo-fractionation | FSW = 0.1742
| Unknown | AMINOACYL-TRNA HYDROLASE |
AT3G60180 | PredictedPhenotypic Enhancement | FSW = 0.1250
| Unknown | URIDYLATE KINASE PUTATIVE / URIDINE MONOPHOSPHATE KINASE PUTATIVE / UMP KINASE PUTATIVE |
AT5G41370 | PredictedPhenotypic Enhancement | FSW = 0.0646
| Unknown | XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT2G19980 | PredictedPhenotypic Enhancement | FSW = 0.0334
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT1G17810 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1349
| Unknown | BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0392
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G78770 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0424
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G20290 | PredictedAffinity Capture-MS | FSW = 0.0338
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT2G42005 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.1385
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT3G03773 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.2645
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S CS DOMAIN (INTERPROIPR007052) HSP20-LIKE CHAPERONE (INTERPROIPR008978) CS (INTERPROIPR017447) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS GLYCINE-RICH PROTEIN (TAIRAT4G024502) HAS 482 BLAST HITS TO 482 PROTEINS IN 157 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 241 FUNGI - 87 PLANTS - 64 VIRUSES - 0 OTHER EUKARYOTES - 90 (SOURCE NCBI BLINK) |
AT2G37670 | PredictedPhenotypic Enhancement | FSW = 0.1890
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT4G36070 | Predictedtwo hybridAffinity Capture-Westernbiochemical | FSW = 0.0820
| Unknown | CPK18 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G26250 | PredictedAffinity Capture-Western | FSW = 0.1446
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT2G35795 | PredictedGene fusion methodCo-expression | FSW = 0.1062
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454