Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G59490 - ( haloacid dehalogenase-like hydrolase family protein )
29 Proteins interacs with AT5G59490Locus | Method | FSW ![]() | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G09590![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0082
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT4G21980![]() ![]() ![]() ![]() | PredictedPhenotypic Suppression | FSW = 0.0336
| Unknown | APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE |
AT3G62870![]() ![]() ![]() ![]() | Predictedsynthetic growth defect | FSW = 0.0325
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G30270![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0436
| Unknown | CIPK23 (CBL-INTERACTING PROTEIN KINASE 23) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT4G33650![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0275
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT5G19830![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0125
| Unknown | AMINOACYL-TRNA HYDROLASE |
AT2G39290![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0430
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT2G40400![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0287
| Unknown | UNKNOWN PROTEIN |
AT5G14320![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0277
| Unknown | 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13) |
AT4G31860![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0727
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT2G17420![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0167
| Unknown | NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) THIOREDOXIN-DISULFIDE REDUCTASE |
AT2G24490![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0194
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT3G50670![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0843
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT4G39910![]() ![]() ![]() ![]() | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1818
| Unknown | ATUBP3 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3) UBIQUITIN-SPECIFIC PROTEASE |
AT5G55160![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1143
| Unknown | SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2) PROTEIN BINDING / PROTEIN TAG |
AT2G29540![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0080
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G19730![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0277
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT1G50370![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0433
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT1G80710![]() ![]() ![]() ![]() | PredictedPhenotypic Suppression | FSW = 0.0301
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G51770![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0178
| Unknown | UNKNOWN PROTEIN |
AT2G31020![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0552
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G46230![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1429
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF652 (INTERPROIPR006984) NUCLEOTIDE BINDING PROTEIN PINC (INTERPROIPR006596) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G265301) HAS 493 BLAST HITS TO 493 PROTEINS IN 165 SPECIES ARCHAE - 21 BACTERIA - 0 METAZOA - 192 FUNGI - 143 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 84 (SOURCE NCBI BLINK) |
AT3G18660![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0303
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT5G22480![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0418
| Unknown | ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN |
AT5G37350![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0545
| Unknown | RIO1 FAMILY PROTEIN |
AT5G53940![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0192
| Unknown | YIPPEE FAMILY PROTEIN |
AT5G60340 | Predictedtwo hybrid | FSW = 0.0418
| Unknown | MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN |
AT5G02230![]() ![]() ![]() ![]() | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1428
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT2G32150![]() ![]() ![]() ![]() | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0552
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454