Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G46230 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Protein of unknown function DUF652 (InterProIPR006984) Nucleotide binding protein PINc (InterProIPR006596) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT1G265301) Has 493 Blast hits to 493 proteins in 165 species Archae - 21 Bacteria - 0 Metazoa - 192 Fungi - 143 Plants - 53 Viruses - 0 Other Eukaryotes - 84 (source NCBI BLink) )

21 Proteins interacs with AT2G46230
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G72730

Predicted

Phenotypic Suppression

FSW = 0.0537

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE
AT4G33650

Predicted

Affinity Capture-MS

FSW = 0.0239

Unknown

DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING
AT1G55920

Predicted

Affinity Capture-MS

FSW = 0.0144

Unknown

ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE
AT4G23430

Predicted

Synthetic Lethality

FSW = 0.0283

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT3G45780

Predicted

two hybrid

FSW = 0.0126

Unknown

PHOT1 (PHOTOTROPIN 1) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE
AT4G04720

Predicted

Affinity Capture-MS

FSW = 0.0274

Unknown

CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G29900

Predicted

Affinity Capture-MS

FSW = 0.0290

Unknown

ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING
AT3G50670

Predicted

Affinity Capture-MS

FSW = 0.1048

Unknown

U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G77950

Predicted

Affinity Capture-MS

FSW = 0.0576

Unknown

AGL67 (AGAMOUS-LIKE 67) TRANSCRIPTION FACTOR
AT2G40290

Predicted

Affinity Capture-MS

FSW = 0.0181

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE
AT5G66540

Predicted

Affinity Capture-Western

FSW = 0.0103

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK)
AT5G47630

Predicted

Affinity Capture-MS

FSW = 0.0349

Unknown

MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING
AT5G55160

Predicted

Affinity Capture-MS

FSW = 0.2503

Unknown

SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2) PROTEIN BINDING / PROTEIN TAG
AT1G34580

Predicted

Affinity Capture-MS

FSW = 0.0100

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT2G31020

Predicted

Affinity Capture-MS

FSW = 0.0291

Unknown

ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT3G53650

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0159

Unknown

HISTONE H2B PUTATIVE
AT4G20870

Predicted

Affinity Capture-MS

FSW = 0.1323

Unknown

FAH2 (FATTY ACID HYDROXYLASE 2) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE
AT4G29140

Predicted

Affinity Capture-MS

FSW = 0.0215

Unknown

MATE EFFLUX PROTEIN-RELATED
AT5G24670

Predicted

Affinity Capture-MS

FSW = 0.0313

Unknown

CATALYTIC/ HYDROLASE/ ZINC ION BINDING
AT5G59490

Predicted

Affinity Capture-MS

FSW = 0.1429

Unknown

HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT1G26530

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0345

Unknown

UNKNOWN PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454