Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G46230 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Protein of unknown function DUF652 (InterProIPR006984) Nucleotide binding protein PINc (InterProIPR006596) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT1G265301) Has 493 Blast hits to 493 proteins in 165 species Archae - 21 Bacteria - 0 Metazoa - 192 Fungi - 143 Plants - 53 Viruses - 0 Other Eukaryotes - 84 (source NCBI BLink) )
21 Proteins interacs with AT2G46230Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G72730 | PredictedPhenotypic Suppression | FSW = 0.0537
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT4G33650 | PredictedAffinity Capture-MS | FSW = 0.0239
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT1G55920 | PredictedAffinity Capture-MS | FSW = 0.0144
| Unknown | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT4G23430 | PredictedSynthetic Lethality | FSW = 0.0283
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT3G45780 | Predictedtwo hybrid | FSW = 0.0126
| Unknown | PHOT1 (PHOTOTROPIN 1) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT4G04720 | PredictedAffinity Capture-MS | FSW = 0.0274
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G29900 | PredictedAffinity Capture-MS | FSW = 0.0290
| Unknown | ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING |
AT3G50670 | PredictedAffinity Capture-MS | FSW = 0.1048
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G77950 | PredictedAffinity Capture-MS | FSW = 0.0576
| Unknown | AGL67 (AGAMOUS-LIKE 67) TRANSCRIPTION FACTOR |
AT2G40290 | PredictedAffinity Capture-MS | FSW = 0.0181
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT5G66540 | PredictedAffinity Capture-Western | FSW = 0.0103
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK) |
AT5G47630 | PredictedAffinity Capture-MS | FSW = 0.0349
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT5G55160 | PredictedAffinity Capture-MS | FSW = 0.2503
| Unknown | SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2) PROTEIN BINDING / PROTEIN TAG |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0100
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0291
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT3G53650 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0159
| Unknown | HISTONE H2B PUTATIVE |
AT4G20870 | PredictedAffinity Capture-MS | FSW = 0.1323
| Unknown | FAH2 (FATTY ACID HYDROXYLASE 2) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT4G29140 | PredictedAffinity Capture-MS | FSW = 0.0215
| Unknown | MATE EFFLUX PROTEIN-RELATED |
AT5G24670 | PredictedAffinity Capture-MS | FSW = 0.0313
| Unknown | CATALYTIC/ HYDROLASE/ ZINC ION BINDING |
AT5G59490 | PredictedAffinity Capture-MS | FSW = 0.1429
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT1G26530 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0345
| Unknown | UNKNOWN PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454