Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G23430 - ( short-chain dehydrogenase/reductase (SDR) family protein )
82 Proteins interacs with AT4G23430Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G23710 | ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.0698
| Class A:plastidClass B:unclearClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | CHLOROPLAST INNER MEMBRANE IMPORT PROTEIN TIC22 PUTATIVE |
AT1G06950 | Experimentalaffinity technologyCo-purificationAffinity Capture-Western | FSW = 0.0566
| Class A:plastidClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | TIC110 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110) |
AT5G16620 | ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.0381
| Class A:plastidClass D:plastid (p = 0.78) | TIC40 |
AT2G01250 | PredictedAffinity Capture-MS | FSW = 0.2173
| Class C:plastid | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT1G07790 | PredictedSynthetic Lethality | FSW = 0.0031
| Class C:plastid | HTB1 DNA BINDING |
AT4G26970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4077
| Class C:plastid | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT2G29690 | PredictedSynthetic Lethality | FSW = 0.0216
| Class C:plastid | ASA2 (ANTHRANILATE SYNTHASE 2) ANTHRANILATE SYNTHASE |
AT4G32470 | PredictedSynthetic Lethality | FSW = 0.0728
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT3G49010 | PredictedSynthetic Lethality | FSW = 0.0188
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G37640 | PredictedGene fusion method | FSW = 0.0209
| Unknown | UBQ9 PROTEIN BINDING |
AT5G24780 | PredictedAffinity Capture-MS | FSW = 0.3952
| Unknown | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
AT5G07090 | PredictedSynthetic Lethality | FSW = 0.0125
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4B) |
AT1G14320 | PredictedSynthetic Lethality | FSW = 0.0196
| Unknown | SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G29990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4445
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT1G75840 | PredictedAffinity Capture-MSSynthetic LethalityAffinity Capture-MS | FSW = 0.3233
| Unknown | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
AT1G27970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2579
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT2G21540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4801
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT5G56350 | PredictedSynthetic Lethality | FSW = 0.0043
| Unknown | PYRUVATE KINASE PUTATIVE |
AT4G04720 | PredictedSynthetic Lethality | FSW = 0.0125
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G62300 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2167
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT4G22120 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4372
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G02450 | PredictedSynthetic Lethality | FSW = 0.0057
| Unknown | GLYCINE-RICH PROTEIN |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.1010
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT5G02490 | PredictedAffinity Capture-MS | FSW = 0.0075
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT3G21700 | PredictedSynthetic Lethality | FSW = 0.0144
| Unknown | SGP2 GTP BINDING |
AT5G54840 | PredictedSynthetic Lethality | FSW = 0.0143
| Unknown | SGP1 GTP BINDING |
AT3G10920 | PredictedAffinity Capture-MS | FSW = 0.2928
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT5G20950 | PredictedSynthetic Lethality | FSW = 0.0099
| Unknown | GLYCOSYL HYDROLASE FAMILY 3 PROTEIN |
AT5G57625 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4491
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedAffinity Capture-MS | FSW = 0.2803
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G08730 | PredictedAffinity Capture-MS | FSW = 0.2275
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G47720 | Predictedtwo hybrid | FSW = 0.0787
| Unknown | ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE |
AT3G16050 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3243
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT2G32720 | PredictedSynthetic Lethality | FSW = 0.0105
| Unknown | CB5-B (CYTOCHROME B5 ISOFORM B) HEME BINDING |
AT1G16350 | PredictedAffinity Capture-MS | FSW = 0.0078
| Unknown | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE |
AT1G24706 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2884
| Unknown | UNKNOWN PROTEIN |
AT1G34580 | PredictedSynthetic Lethality | FSW = 0.0922
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G59580 | PredictedSynthetic Lethality | FSW = 0.0046
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT1G66740 | PredictedSynthetic Lethality | FSW = 0.0120
| Unknown | SGA2 |
AT2G03040 | PredictedAffinity Capture-MS | FSW = 0.0958
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G19910 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3934
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G43360 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4896
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT2G46230 | PredictedSynthetic Lethality | FSW = 0.0283
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF652 (INTERPROIPR006984) NUCLEOTIDE BINDING PROTEIN PINC (INTERPROIPR006596) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G265301) HAS 493 BLAST HITS TO 493 PROTEINS IN 165 SPECIES ARCHAE - 21 BACTERIA - 0 METAZOA - 192 FUNGI - 143 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 84 (SOURCE NCBI BLINK) |
AT3G08700 | PredictedSynthetic Lethality | FSW = 0.0210
| Unknown | UBC12 (UBIQUITIN-CONJUGATING ENZYME 12) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE |
AT3G18850 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3002
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G51110 | PredictedSynthetic Lethality | FSW = 0.0171
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT4G04695 | PredictedSynthetic Lethality | FSW = 0.0147
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G58520 | PredictedAffinity Capture-MS | FSW = 0.4940
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
AT1G78290 | PredictedAffinity Capture-MS | FSW = 0.3595
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT2G01770 | PredictedAffinity Capture-MS | FSW = 0.5195
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
AT2G34250 | PredictedAffinity Capture-MS | FSW = 0.2506
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G41530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3490
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT2G45080 | PredictedAffinity Capture-MS | FSW = 0.2722
| Unknown | CYCP31 (CYCLIN P31) CYCLIN-DEPENDENT PROTEIN KINASE |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.2689
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT2G47570 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3065
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G11900 | PredictedAffinity Capture-MS | FSW = 0.4316
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G12690 | PredictedAffinity Capture-MS | FSW = 0.1041
| Unknown | AGC15 (AGC KINASE 15) KINASE |
AT3G49880 | PredictedAffinity Capture-MS | FSW = 0.4034
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G51880 | PredictedAffinity Capture-MS | FSW = 0.4955
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT3G53730 | PredictedAffinity Capture-MS | FSW = 0.4265
| Unknown | HISTONE H4 |
AT3G59410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3350
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G17380 | PredictedAffinity Capture-MS | FSW = 0.2833
| Unknown | MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT4G19645 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3549
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT4G35620 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3593
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G19150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.3667
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.2187
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G20060 | PredictedAffinity Capture-MS | FSW = 0.4344
| Unknown | PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN |
AT5G27640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4343
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT4G37490 | PredictedSynthetic Lethality | FSW = 0.0263
| Unknown | CYCB11 (CYCLIN B11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G01770 | PredictedSynthetic Lethality | FSW = 0.0037
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G27970 | PredictedSynthetic Lethality | FSW = 0.0037
| Unknown | BINDING |
AT5G46280 | PredictedSynthetic Lethality | FSW = 0.0036
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT5G57890 | PredictedAffinity Capture-MS | FSW = 0.2295
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT4G24050 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.2151
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT4G23420 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.1162
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT4G11410 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.1654
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT4G09750 | PredictedGene fusion methodPhylogenetic profile method | FSW = 0.1564
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT5G53090 | PredictedPhylogenetic profile method | FSW = 0.1957
| Unknown | BINDING / CATALYTIC/ OXIDOREDUCTASE |
AT1G64590 | PredictedPhylogenetic profile method | FSW = 0.1870
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT5G04070 | PredictedPhylogenetic profile method | FSW = 0.1957
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT2G37540 | PredictedPhylogenetic profile method | FSW = 0.0879
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT5G02540 | PredictedPhylogenetic profile method | FSW = 0.2151
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454