Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G34250 - ( protein transport protein sec61 putative )
72 Proteins interacs with AT2G34250Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G07680 | PredictedAffinity Capture-MS | FSW = 0.0718
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT5G24770 | PredictedAffinity Capture-MS | FSW = 0.1021
| Unknown | VSP2 (VEGETATIVE STORAGE PROTEIN 2) ACID PHOSPHATASE |
AT3G26590 | Predictedbiochemical | FSW = 0.0238
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT5G10350 | PredictedSynthetic Rescue | FSW = 0.0153
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT2G29990 | PredictedAffinity Capture-MS | FSW = 0.2262
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT1G07890 | PredictedAffinity Capture-MS | FSW = 0.0207
| Unknown | APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE |
AT5G24400 | PredictedAffinity Capture-MS | FSW = 0.0983
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT4G26970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2450
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT4G23430 | PredictedAffinity Capture-MS | FSW = 0.2506
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT1G80190 | PredictedAffinity Capture-MS | FSW = 0.0702
| Unknown | PSF1 (PARTNER OF SLD FIVE 1) |
AT1G02780 | PredictedAffinity Capture-MS | FSW = 0.0486
| Unknown | EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G48930 | Predictedbiochemical | FSW = 0.0160
| Unknown | EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G29310 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0701
| Unknown | P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
AT2G21540 | PredictedAffinity Capture-MS | FSW = 0.2797
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT5G26340 | Predictedinterologs mappingtwo hybridtwo hybridColocalizationinterologs mappingAffinity Capture-Western | FSW = 0.0582
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G22120 | PredictedAffinity Capture-MS | FSW = 0.3054
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT3G53960 | PredictedSynthetic Rescue | FSW = 0.0909
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.0825
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT1G06960 | PredictedAffinity Capture-MS | FSW = 0.0120
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT2G40290 | PredictedAffinity Capture-MS | FSW = 0.0061
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT1G72330 | Predictedtwo hybrid | FSW = 0.0506
| Unknown | ALAAT2 (ALANINE AMINOTRANSFERASE 2) ATP BINDING / L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT5G24090 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MS | FSW = 0.0983
| Unknown | ACIDIC ENDOCHITINASE (CHIB1) |
AT2G19980 | Predictedinterologs mapping | FSW = 0.0186
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT2G38960 | Predictedbiochemical | FSW = 0.0096
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT3G08730 | PredictedAffinity Capture-Western | FSW = 0.1993
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.2403
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT5G48070 | PredictedAffinity Capture-MS | FSW = 0.0112
| Unknown | XTH20 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20) HYDROLASE ACTING ON GLYCOSYL BONDS / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE |
AT3G13900 | PredictedColocalization | FSW = 0.0433
| Unknown | ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM |
AT4G10920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0203
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT3G27530 | Predictedtwo hybrid | FSW = 0.0109
| Unknown | GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER |
AT1G08190 | Predictedtwo hybridtwo hybrid | FSW = 0.0163
| Unknown | VACUOLAR ASSEMBLY PROTEIN PUTATIVE (VPS41) |
AT5G06160 | Predictedtwo hybridtwo hybrid | FSW = 0.0171
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G35430 | Predictedtwo hybridtwo hybrid | FSW = 0.0263
| Unknown | BINDING |
AT4G35410 | PredictedAffinity Capture-MS | FSW = 0.0112
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT1G55060 | PredictedColocalizationColocalization | FSW = 0.0777
| Unknown | UBQ12 (UBIQUITIN 12) PROTEIN BINDING |
AT1G58520 | PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.3194
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.2854
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT1G31170 | PredictedAffinity Capture-MS | FSW = 0.0721
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G74810 | Predictedsynthetic growth defect | FSW = 0.0876
| Unknown | BOR5 ANION EXCHANGER |
AT1G78290 | PredictedAffinity Capture-MS | FSW = 0.2932
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT2G01770 | PredictedAffinity Capture-MS | FSW = 0.4017
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0103
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G37760 | PredictedAffinity Capture-MS | FSW = 0.1862
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G40930 | PredictedAffinity Capture-MS | FSW = 0.1555
| Unknown | UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5) UBIQUITIN-SPECIFIC PROTEASE |
AT2G41530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2340
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT2G47570 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2554
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G11900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2863
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G18850 | PredictedAffinity Capture-MS | FSW = 0.1970
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G45240 | PredictedAffinity Capture-MS | FSW = 0.0686
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
AT3G47300 | Predictedtwo hybridco-fractionationCo-fractionationCo-purificationAffinity Capture-WesternAffinity Capture-MS | FSW = 0.2259
| Unknown | SELT (SELT-LIKE PROTEIN PRECURSOR) SELENIUM BINDING |
AT3G51880 | PredictedAffinity Capture-MS | FSW = 0.2669
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT3G59410 | PredictedAffinity Capture-MS | FSW = 0.2080
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G61740 | PredictedColocalizationco-fractionationCo-fractionationAffinity Capture-Western | FSW = 0.1382
| Unknown | SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G09200 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0462
| Unknown | SPLA/RYANODINE RECEPTOR (SPRY) DOMAIN-CONTAINING PROTEIN |
AT4G14000 | PredictedSynthetic RescueSynthetic RescuebiochemicalSynthetic Rescue | FSW = 0.0608
| Unknown | UNKNOWN PROTEIN |
AT4G14240 | Predictedbiochemical | FSW = 0.0282
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
AT4G35620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2084
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G17000 | PredictedAffinity Capture-MS | FSW = 0.1501
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G20060 | PredictedAffinity Capture-MS | FSW = 0.3019
| Unknown | PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN |
AT5G60550 | Predictedsynthetic growth defect | FSW = 0.0823
| Unknown | GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2) KINASE |
AT5G66640 | Predictedbiochemical | FSW = 0.0186
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT2G43360 | PredictedAffinity Capture-MS | FSW = 0.2536
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.1689
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G04710 | PredictedAffinity Capture-MS | FSW = 0.0310
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT3G22290 | Predictedinterologs mapping | FSW = 0.0365
| Unknown | UNKNOWN PROTEIN |
AT3G49880 | PredictedAffinity Capture-MS | FSW = 0.3427
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G53730 | PredictedAffinity Capture-MS | FSW = 0.2845
| Unknown | HISTONE H4 |
AT3G62770 | PredictedAffinity Capture-MS | FSW = 0.0731
| Unknown | ATATG18A |
AT4G29640 | PredictedAffinity Capture-MS | FSW = 0.0189
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.1321
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G24840 | PredictedAffinity Capture-MS | FSW = 0.0787
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT1G78720 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0287
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454