Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G48930 - ( EMB1080 (embryo defective 1080) structural constituent of ribosome )
47 Proteins interacs with AT3G48930Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G22290 | Experimentalpull down | FSW = 0.0094
| Class A:nucleusClass B:plasma membranecytosolClass D:cytosol (p = 0.67) | ANAC089 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 89) TRANSCRIPTION FACTOR |
AT5G23740 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0214
| Class C:plasma membranenucleus | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G13450 | Predictedbiochemical | FSW = 0.0195
| Class C:plasma membrane | ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE |
AT1G04750 | Predictedbiochemical | FSW = 0.0225
| Class C:plasma membrane | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT1G70490 | PredictedPhenotypic EnhancementPhenotypic EnhancementSynthetic Lethality | FSW = 0.0124
| Class C:plasma membrane | ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT4G33090 | Predictedbiochemical | FSW = 0.0222
| Class C:plasma membrane | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT3G16340 | Predictedbiochemical | FSW = 0.0457
| Class C:plasma membrane | PDR1 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G77210 | Predictedbiochemical | FSW = 0.0120
| Class C:plasma membrane | SUGAR TRANSPORTER PUTATIVE |
AT3G02090 | Predictedbiochemical | FSW = 0.0084
| Class C:nucleus | MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PUTATIVE |
AT5G65430 | Predictedbiochemical | FSW = 0.0201
| Class C:nucleus | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G19610 | Predictedtwo hybridCo-expression | FSW = 0.0667
| Class C:nucleus | RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G30050 | Predictedbiochemical | FSW = 0.0097
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G22840 | Predictedbiochemical | FSW = 0.0440
| Unknown | CYTC-1 (CYTOCHROME C-1) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
AT4G14800 | PredictedAffinity Capture-MS | FSW = 0.0029
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G04290 | Predictedtwo hybrid | FSW = 0.0879
| Unknown | THIOESTERASE FAMILY PROTEIN |
AT4G12590 | Predictedbiochemical | FSW = 0.0586
| Unknown | UNKNOWN PROTEIN |
AT2G18700 | Predictedbiochemical | FSW = 0.0372
| Unknown | ATTPS11 TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT4G04870 | Predictedbiochemical | FSW = 0.0252
| Unknown | CLS (CARDIOLIPIN SYNTHASE) CARDIOLIPIN SYNTHASE/ PHOSPHATIDYLTRANSFERASE |
AT3G55430 | Predictedbiochemical | FSW = 0.0200
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN / BETA-13-GLUCANASE PUTATIVE |
AT4G30800 | PredictedbiochemicalPhylogenetic profile methodCo-expression | FSW = 0.0842
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
AT5G62160 | Predictedbiochemical | FSW = 0.0441
| Unknown | ATZIP12 (ZINC TRANSPORTER 12 PRECURSOR) CATION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0028
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT1G06830 | Predictedbiochemical | FSW = 0.0065
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT1G13580 | Predictedbiochemical | FSW = 0.0224
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G15240 | Predictedbiochemical | FSW = 0.0473
| Unknown | PHOX (PX) DOMAIN-CONTAINING PROTEIN |
AT1G20693 | Predictedbiochemical | FSW = 0.0565
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT2G01770 | Predictedbiochemical | FSW = 0.0202
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
AT2G27920 | Predictedbiochemical | FSW = 0.0110
| Unknown | SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51) SERINE-TYPE CARBOXYPEPTIDASE |
AT2G34250 | Predictedbiochemical | FSW = 0.0160
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G35390 | Predictedbiochemical | FSW = 0.0158
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G36060 | Predictedbiochemical | FSW = 0.0293
| Unknown | UBIQUITIN-CONJUGATING ENZYME FAMILY PROTEIN |
AT2G44065 | Predictedbiochemical | FSW = 0.0076
| Unknown | RIBOSOMAL PROTEIN L2 FAMILY PROTEIN |
AT3G11240 | Predictedbiochemical | FSW = 0.0320
| Unknown | ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE |
AT3G18850 | PredictedAffinity Capture-MS | FSW = 0.0354
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G45190 | Predictedbiochemical | FSW = 0.0128
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
AT3G57140 | Predictedbiochemical | FSW = 0.0268
| Unknown | PATATIN-RELATED |
AT4G00980 | Predictedbiochemical | FSW = 0.0191
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT4G11640 | Predictedbiochemical | FSW = 0.0189
| Unknown | ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE) SERINE RACEMASE |
AT4G27130 | Predictedbiochemical | FSW = 0.0258
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G22030 | Predictedbiochemical | FSW = 0.0211
| Unknown | UBP8 (UBIQUITIN-SPECIFIC PROTEASE 8) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT5G66620 | Predictedbiochemical | FSW = 0.0145
| Unknown | DAR6 (DA1-RELATED PROTEIN 6) ZINC ION BINDING |
AT5G08420 | PredictedAffinity Capture-MS | FSW = 0.0267
| Unknown | RNA BINDING |
AT1G69070 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0273
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK) |
AT1G31660 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0278
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK) |
AT3G01160 | Predictedtwo hybridCo-expression | FSW = 0.0304
| Unknown | UNKNOWN PROTEIN |
AT1G54390 | Predictedtwo hybrid | FSW = 0.0049
| Unknown | PHD FINGER PROTEIN-RELATED |
AT2G35940 | Predictedtwo hybrid | FSW = 0.0078
| Unknown | BLH1 (BEL1-LIKE HOMEODOMAIN 1) DNA BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ TRANSCRIPTION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454