Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G69070 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 23 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Nop14-like protein (InterProIPR007276) Has 64668 Blast hits to 30830 proteins in 1152 species Archae - 207 Bacteria - 18692 Metazoa - 20758 Fungi - 6782 Plants - 2177 Viruses - 523 Other Eukaryotes - 15529 (source NCBI BLink) )
63 Proteins interacs with AT1G69070Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G49240 | PredictedSynthetic Lethality | FSW = 0.0119
| Unknown | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G09630 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0948
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT2G17360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2257
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT5G15200 | PredictedAffinity Capture-MS | FSW = 0.2164
| Unknown | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
AT1G12360 | PredictedSynthetic Lethality | FSW = 0.0107
| Unknown | KEU (KEULE) PROTEIN TRANSPORTER |
AT5G20290 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3113
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
AT3G04840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0527
| Unknown | 40S RIBOSOMAL PROTEIN S3A (RPS3AA) |
AT1G06380 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0563
| Unknown | RIBOSOMAL PROTEIN-RELATED |
AT3G06530 | PredictedAffinity Capture-MS | FSW = 0.5133
| Unknown | BINDING |
AT4G34670 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1502
| Unknown | 40S RIBOSOMAL PROTEIN S3A (RPS3AB) |
AT3G11510 | PredictedAffinity Capture-MS | FSW = 0.1362
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
AT3G11964 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3026
| Unknown | RNA BINDING |
AT2G04390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1263
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17A) |
AT4G00100 | PredictedAffinity Capture-MS | FSW = 0.3561
| Unknown | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G48930 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0273
| Unknown | EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G12110 | PredictedSynthetic Lethality | FSW = 0.0151
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G52640 | PredictedAffinity Capture-MS | FSW = 0.0104
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G17310 | PredictedAffinity Capture-MS | FSW = 0.0936
| Unknown | UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE PUTATIVE / UDP-GLUCOSE PYROPHOSPHORYLASE PUTATIVE / UGPASE PUTATIVE |
AT3G03250 | PredictedAffinity Capture-MS | FSW = 0.1034
| Unknown | UGP (UDP-GLUCOSE PYROPHOSPHORYLASE) UTPGLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT1G63810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4424
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
AT5G04600 | PredictedAffinity Capture-MS | FSW = 0.2319
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G25630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3420
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT3G58660 | PredictedAffinity Capture-MS | FSW = 0.0828
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT3G56990 | PredictedAffinity Capture-MS | FSW = 0.3752
| Unknown | EDA7 (EMBRYO SAC DEVELOPMENT ARREST 7) |
AT3G21540 | PredictedAffinity Capture-MS | FSW = 0.4019
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G05060 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4133
| Unknown | SAR DNA-BINDING PROTEIN PUTATIVE |
AT3G12860 | PredictedAffinity Capture-MS | FSW = 0.4459
| Unknown | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
AT4G05410 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5468
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G08350 | PredictedAffinity Capture-MS | FSW = 0.0210
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT5G66540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5791
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK) |
AT2G34210 | PredictedAffinity Capture-MS | FSW = 0.0206
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT3G18600 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0636
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G57000 | Predictedtwo hybridAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5864
| Unknown | NUCLEOLAR ESSENTIAL PROTEIN-RELATED |
AT5G58420 | PredictedAffinity Capture-MS | FSW = 0.2975
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4D) |
AT4G30990 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0919
| Unknown | BINDING |
AT2G47990 | PredictedAffinity Capture-MS | FSW = 0.3710
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
AT5G22100 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3459
| Unknown | RNA CYCLASE FAMILY PROTEIN |
AT1G10490 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4979
| Unknown | UNKNOWN PROTEIN |
AT4G30800 | PredictedAffinity Capture-MS | FSW = 0.1815
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
AT1G06720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4759
| Unknown | INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G424401) HAS 7944 BLAST HITS TO 5342 PROTEINS IN 373 SPECIES ARCHAE - 33 BACTERIA - 667 METAZOA - 2609 FUNGI - 1045 PLANTS - 414 VIRUSES - 80 OTHER EUKARYOTES - 3096 (SOURCE NCBI BLINK) |
AT1G31660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4888
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK) |
AT1G42440 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1753
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK) |
AT1G15440 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2801
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G64520 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0083
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT2G17250 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.6246
| Unknown | EMB2762 (EMBRYO DEFECTIVE 2762) |
AT3G10530 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4588
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G24080 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2351
| Unknown | KRR1 FAMILY PROTEIN |
AT3G27000 | PredictedSynthetic Lethality | FSW = 0.0129
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G02400 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0805
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN SMALL-SUBUNIT PROCESSOME EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SMALL-SUBUNIT PROCESSOME UTP14 (INTERPROIPR006709) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS U3 RIBONUCLEOPROTEIN (UTP) FAMILY PROTEIN (TAIRAT5G086001) HAS 7412 BLAST HITS TO 4272 PROTEINS IN 301 SPECIES ARCHAE - 10 BACTERIA - 517 METAZOA - 2926 FUNGI - 722 PLANTS - 242 VIRUSES - 149 OTHER EUKARYOTES - 2846 (SOURCE NCBI BLINK) |
AT4G30991 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5162
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN SMALL-SUBUNIT PROCESSOME EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SMALL-SUBUNIT PROCESSOME UTP14 (INTERPROIPR006709) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS U3 RIBONUCLEOPROTEIN (UTP) FAMILY PROTEIN (TAIRAT5G086001) HAS 7412 BLAST HITS TO 4272 PROTEINS IN 301 SPECIES ARCHAE - 10 BACTERIA - 517 METAZOA - 2926 FUNGI - 722 PLANTS - 242 VIRUSES - 149 OTHER EUKARYOTES - 2846 (SOURCE NCBI BLINK) |
AT5G08420 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5196
| Unknown | RNA BINDING |
AT5G27740 | PredictedSynthetic LethalityCo-expression | FSW = 0.0039
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT2G34357 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4310
| Unknown | BINDING |
AT3G07890 | PredictedAffinity Capture-MS | FSW = 0.0813
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT4G07410 | PredictedAffinity Capture-MS | FSW = 0.4622
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G28200 | PredictedAffinity Capture-MS | FSW = 0.5411
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK) |
AT4G28450 | PredictedAffinity Capture-MS | FSW = 0.5242
| Unknown | NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G15750 | PredictedAffinity Capture-MS | FSW = 0.5095
| Unknown | RNA-BINDING S4 DOMAIN-CONTAINING PROTEIN |
AT5G16750 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2295
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
AT5G61330 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2133
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
AT5G65900 | PredictedAffinity Capture-MS | FSW = 0.1805
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G33390 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1698
| Unknown | HELICASE DOMAIN-CONTAINING PROTEIN |
AT1G02010 | PredictedSynthetic Lethality | FSW = 0.0163
| Unknown | SEC1A (SIMILAR TO ELECTRON CAREER 1A) PROTEIN TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454