Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G69070 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 23 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Nop14-like protein (InterProIPR007276) Has 64668 Blast hits to 30830 proteins in 1152 species Archae - 207 Bacteria - 18692 Metazoa - 20758 Fungi - 6782 Plants - 2177 Viruses - 523 Other Eukaryotes - 15529 (source NCBI BLink) )

63 Proteins interacs with AT1G69070
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G49240

Predicted

Synthetic Lethality

FSW = 0.0119

Unknown

ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G09630

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0948

Unknown

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G17360

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2257

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT5G15200

Predicted

Affinity Capture-MS

FSW = 0.2164

Unknown

40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT1G12360

Predicted

Synthetic Lethality

FSW = 0.0107

Unknown

KEU (KEULE) PROTEIN TRANSPORTER
AT5G20290

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3113

Unknown

40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT3G04840

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0527

Unknown

40S RIBOSOMAL PROTEIN S3A (RPS3AA)
AT1G06380

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0563

Unknown

RIBOSOMAL PROTEIN-RELATED
AT3G06530

Predicted

Affinity Capture-MS

FSW = 0.5133

Unknown

BINDING
AT4G34670

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1502

Unknown

40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT3G11510

Predicted

Affinity Capture-MS

FSW = 0.1362

Unknown

40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT3G11964Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.3026

Unknown

RNA BINDING
AT2G04390

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1263

Unknown

40S RIBOSOMAL PROTEIN S17 (RPS17A)
AT4G00100

Predicted

Affinity Capture-MS

FSW = 0.3561

Unknown

ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G48930

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0273

Unknown

EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G12110

Predicted

Synthetic Lethality

FSW = 0.0151

Unknown

ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G52640

Predicted

Affinity Capture-MS

FSW = 0.0104

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT5G17310

Predicted

Affinity Capture-MS

FSW = 0.0936

Unknown

UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE PUTATIVE / UDP-GLUCOSE PYROPHOSPHORYLASE PUTATIVE / UGPASE PUTATIVE
AT3G03250

Predicted

Affinity Capture-MS

FSW = 0.1034

Unknown

UGP (UDP-GLUCOSE PYROPHOSPHORYLASE) UTPGLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT1G63810

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4424

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK)
AT5G04600

Predicted

Affinity Capture-MS

FSW = 0.2319

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G25630

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.3420

Unknown

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT3G58660

Predicted

Affinity Capture-MS

FSW = 0.0828

Unknown

60S RIBOSOMAL PROTEIN-RELATED
AT3G56990

Predicted

Affinity Capture-MS

FSW = 0.3752

Unknown

EDA7 (EMBRYO SAC DEVELOPMENT ARREST 7)
AT3G21540

Predicted

Affinity Capture-MS

FSW = 0.4019

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G05060

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.4133

Unknown

SAR DNA-BINDING PROTEIN PUTATIVE
AT3G12860

Predicted

Affinity Capture-MS

FSW = 0.4459

Unknown

NUCLEOLAR PROTEIN NOP56 PUTATIVE
AT4G05410

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.5468

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G08350

Predicted

Affinity Capture-MS

FSW = 0.0210

Unknown

GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR
AT5G66540

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.5791

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK)
AT2G34210

Predicted

Affinity Capture-MS

FSW = 0.0206

Unknown

STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR
AT3G18600

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0636

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT3G57000

Predicted

two hybrid

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.5864

Unknown

NUCLEOLAR ESSENTIAL PROTEIN-RELATED
AT5G58420

Predicted

Affinity Capture-MS

FSW = 0.2975

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT4G30990

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.0919

Unknown

BINDING
AT2G47990

Predicted

Affinity Capture-MS

FSW = 0.3710

Unknown

SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING
AT5G22100

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3459

Unknown

RNA CYCLASE FAMILY PROTEIN
AT1G10490

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.4979

Unknown

UNKNOWN PROTEIN
AT4G30800

Predicted

Affinity Capture-MS

FSW = 0.1815

Unknown

40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT1G06720

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.4759

Unknown

INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G424401) HAS 7944 BLAST HITS TO 5342 PROTEINS IN 373 SPECIES ARCHAE - 33 BACTERIA - 667 METAZOA - 2609 FUNGI - 1045 PLANTS - 414 VIRUSES - 80 OTHER EUKARYOTES - 3096 (SOURCE NCBI BLINK)
AT1G31660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4888

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G42440

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1753

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK)
AT1G15440

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2801

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G64520

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0083

Unknown

RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE
AT2G17250

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.6246

Unknown

EMB2762 (EMBRYO DEFECTIVE 2762)
AT3G10530

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.4588

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G24080

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2351

Unknown

KRR1 FAMILY PROTEIN
AT3G27000

Predicted

Synthetic Lethality

FSW = 0.0129

Unknown

ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT4G02400

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0805

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN SMALL-SUBUNIT PROCESSOME EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SMALL-SUBUNIT PROCESSOME UTP14 (INTERPROIPR006709) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS U3 RIBONUCLEOPROTEIN (UTP) FAMILY PROTEIN (TAIRAT5G086001) HAS 7412 BLAST HITS TO 4272 PROTEINS IN 301 SPECIES ARCHAE - 10 BACTERIA - 517 METAZOA - 2926 FUNGI - 722 PLANTS - 242 VIRUSES - 149 OTHER EUKARYOTES - 2846 (SOURCE NCBI BLINK)
AT4G30991Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5162

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN SMALL-SUBUNIT PROCESSOME EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SMALL-SUBUNIT PROCESSOME UTP14 (INTERPROIPR006709) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS U3 RIBONUCLEOPROTEIN (UTP) FAMILY PROTEIN (TAIRAT5G086001) HAS 7412 BLAST HITS TO 4272 PROTEINS IN 301 SPECIES ARCHAE - 10 BACTERIA - 517 METAZOA - 2926 FUNGI - 722 PLANTS - 242 VIRUSES - 149 OTHER EUKARYOTES - 2846 (SOURCE NCBI BLINK)
AT5G08420

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.5196

Unknown

RNA BINDING
AT5G27740

Predicted

Synthetic Lethality

Co-expression

FSW = 0.0039

Unknown

EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT2G34357Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.4310

Unknown

BINDING
AT3G07890

Predicted

Affinity Capture-MS

FSW = 0.0813

Unknown

RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT4G07410

Predicted

Affinity Capture-MS

FSW = 0.4622

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G28200

Predicted

Affinity Capture-MS

FSW = 0.5411

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK)
AT4G28450

Predicted

Affinity Capture-MS

FSW = 0.5242

Unknown

NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G15750

Predicted

Affinity Capture-MS

FSW = 0.5095

Unknown

RNA-BINDING S4 DOMAIN-CONTAINING PROTEIN
AT5G16750

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2295

Unknown

TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING
AT5G61330

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2133

Unknown

RRNA PROCESSING PROTEIN-RELATED
AT5G65900

Predicted

Affinity Capture-MS

FSW = 0.1805

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G33390

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.1698

Unknown

HELICASE DOMAIN-CONTAINING PROTEIN
AT1G02010

Predicted

Synthetic Lethality

FSW = 0.0163

Unknown

SEC1A (SIMILAR TO ELECTRON CAREER 1A) PROTEIN TRANSPORTER

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454