Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G06720 - ( INVOLVED IN ribosome biogenesis LOCATED IN nucleus EXPRESSED IN 21 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s AARP2CN (InterProIPR012948) Protein of unknown function DUF663 (InterProIPR007034) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT1G424401) Has 7944 Blast hits to 5342 proteins in 373 species Archae - 33 Bacteria - 667 Metazoa - 2609 Fungi - 1045 Plants - 414 Viruses - 80 Other Eukaryotes - 3096 (source NCBI BLink) )

46 Proteins interacs with AT1G06720
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G17360

Predicted

Affinity Capture-MS

FSW = 0.1599

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT3G02520

Predicted

synthetic growth defect

FSW = 0.0082

Unknown

GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G06530

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5556

Unknown

BINDING
AT1G35160

Predicted

synthetic growth defect

FSW = 0.0144

Unknown

GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT4G00100

Predicted

Affinity Capture-MS

FSW = 0.2849

Unknown

ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G63810

Predicted

Affinity Capture-MS

FSW = 0.4604

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK)
AT4G25630

Predicted

Affinity Capture-MS

FSW = 0.2905

Unknown

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT4G26600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.0198

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT3G56990

Predicted

Affinity Capture-MS

FSW = 0.4956

Unknown

EDA7 (EMBRYO SAC DEVELOPMENT ARREST 7)
AT5G37720

Predicted

Affinity Capture-MS

FSW = 0.0323

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT3G21540

Predicted

Affinity Capture-MS

FSW = 0.4918

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G19610Predicted

Affinity Capture-MS

FSW = 0.1346

Unknown

RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G55920

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0344

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT3G12860

Predicted

Affinity Capture-MS

FSW = 0.4801

Unknown

NUCLEOLAR PROTEIN NOP56 PUTATIVE
AT3G62310

Predicted

Affinity Capture-MS

FSW = 0.1505

Unknown

RNA HELICASE PUTATIVE
AT4G05410

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.5629

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G66540

Predicted

Affinity Capture-MS

FSW = 0.5243

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK)
AT3G57000

Predicted

Affinity Capture-MS

FSW = 0.6606

Unknown

NUCLEOLAR ESSENTIAL PROTEIN-RELATED
AT5G43430

Predicted

Affinity Capture-MS

FSW = 0.0216

Unknown

ETFBETA ELECTRON CARRIER
AT2G47990

Predicted

Affinity Capture-MS

FSW = 0.4137

Unknown

SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING
AT1G15960

Predicted

Affinity Capture-MS

FSW = 0.0232

Unknown

NRAMP6 INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER
AT5G22100

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-MS

Reconstituted Complex

FSW = 0.2608

Unknown

RNA CYCLASE FAMILY PROTEIN
AT1G10490

Predicted

Affinity Capture-MS

FSW = 0.3928

Unknown

UNKNOWN PROTEIN
AT1G47240

Predicted

Affinity Capture-MS

FSW = 0.0454

Unknown

NRAMP2 INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER
AT1G15440

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2222

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G31660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.3720

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G67190

Predicted

Affinity Capture-MS

FSW = 0.0367

Unknown

F-BOX FAMILY PROTEIN
AT1G68650

Predicted

Affinity Capture-MS

FSW = 0.0703

Unknown

UNKNOWN PROTEIN
AT1G69070

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.4759

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK)
AT1G72320

Predicted

Affinity Capture-MS

FSW = 0.3792

Unknown

APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING
AT2G17250

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.5824

Unknown

EMB2762 (EMBRYO DEFECTIVE 2762)
AT2G34357Predicted

Affinity Capture-MS

FSW = 0.3359

Unknown

BINDING
AT3G10530

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4918

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G56510

Predicted

Affinity Capture-MS

FSW = 0.2913

Unknown

TBP-BINDING PROTEIN PUTATIVE
AT4G04940

Predicted

Affinity Capture-MS

FSW = 0.5787

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G07410

Predicted

Affinity Capture-MS

FSW = 0.5699

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G08500

Predicted

biochemical

FSW = 0.0182

Unknown

MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING
AT4G28200

Predicted

Affinity Capture-MS

FSW = 0.5844

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK)
AT4G28450

Predicted

Affinity Capture-MS

FSW = 0.5612

Unknown

NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G30991Predicted

Affinity Capture-MS

FSW = 0.5566

Unknown

NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G08420

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.3943

Unknown

RNA BINDING
AT5G15750

Predicted

Affinity Capture-MS

FSW = 0.5973

Unknown

RNA-BINDING S4 DOMAIN-CONTAINING PROTEIN
AT5G16750

Predicted

Affinity Capture-MS

FSW = 0.3398

Unknown

TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING
AT5G61330

Predicted

Affinity Capture-MS

FSW = 0.2961

Unknown

RRNA PROCESSING PROTEIN-RELATED
AT5G36290

Predicted

Affinity Capture-MS

FSW = 0.0703

Unknown

UNKNOWN PROTEIN
AT5G02530

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0164

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454