Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G55920 - ( nucleolar protein putative )
72 Proteins interacs with AT5G55920| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G18020
   | PredictedAffinity Capture-MS | FSW = 0.1626
| Class C:nucleus | EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G09630
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1614
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
| AT2G42740
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2018
| Class C:nucleus | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G49010
| PredictedAffinity Capture-MS | FSW = 0.1725
| Class C:nucleus | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G22440
| PredictedAffinity Capture-MS | FSW = 0.2893
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
| AT3G03920
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0285
| Class C:nucleus | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
| AT3G01610
| PredictedAffinity Capture-MS | FSW = 0.3149
| Class C:nucleus | CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT3G11964 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2894
| Class C:nucleus | RNA BINDING |
| AT5G39740
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3883
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
| AT2G44860
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2554
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
| AT5G04600
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4714
| Class C:nucleus | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT4G25630
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2305
| Class C:nucleus | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
| AT1G72440
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3972
| Class C:nucleus | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
| AT3G23620
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5720
| Class C:nucleus | BRIX DOMAIN-CONTAINING PROTEIN |
| AT3G16810
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5226
| Class C:nucleus | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
| AT3G07050
| Predictedinteraction predictionCo-expression | FSW = 0.3600
| Class C:nucleus | GTP-BINDING FAMILY PROTEIN |
| AT3G58660
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5544
| Class C:nucleus | 60S RIBOSOMAL PROTEIN-RELATED |
| AT5G37720
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0677
| Class C:nucleus | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
| AT1G65030
| Predictedinteraction prediction | FSW = 0.1072
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT3G12860
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0770
| Class C:nucleus | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
| AT3G54350
| Predictedtwo hybridReconstituted Complexco-fractionationCo-fractionation | FSW = 0.0377
| Class C:nucleus | EMB1967 (EMBRYO DEFECTIVE 1967) |
| AT2G37990
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2343
| Class C:nucleus | RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN |
| AT3G20010
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0135
| Class C:nucleus | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
| AT4G08350
| PredictedAffinity Capture-MS | FSW = 0.0559
| Class C:nucleus | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
| AT3G55620
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4040
| Class C:nucleus | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
| AT5G52470
| Predictedco-fractionationCo-fractionation | FSW = 0.0583
| Class C:nucleus | FIB1 (FIBRILLARIN 1) SNORNA BINDING |
| AT1G63810
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1085
| Class C:nucleus | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
| AT5G15550
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4646
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT2G38940
| Predictedinteraction prediction | FSW = 0.0119
| Unknown | ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT4G18730 | PredictedAffinity Capture-MS | FSW = 0.1317
| Unknown | RPL16B STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G13580
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3280
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
| AT5G43940
| PredictedAffinity Capture-MS | FSW = 0.1053
| Unknown | HOT5 (SENSITIVE TO HOT TEMPERATURES 5) S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE/ S-NITROSOGLUTATHIONE REDUCTASE |
| AT1G11680
| PredictedSynthetic Lethality | FSW = 0.0153
| Unknown | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
| AT2G37600
| PredictedAffinity Capture-MS | FSW = 0.1632
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
| AT1G74270
| PredictedAffinity Capture-MS | FSW = 0.1936
| Unknown | 60S RIBOSOMAL PROTEIN L35A (RPL35AC) |
| AT4G15000
| PredictedAffinity Capture-MS | FSW = 0.1238
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
| AT3G54700
| PredictedAffinity Capture-MS | FSW = 0.0133
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT2G40360
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4495
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G50920
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5831
| Unknown | GTP-BINDING PROTEIN-RELATED |
| AT3G22660
| PredictedAffinity Capture-MS | FSW = 0.4518
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
| AT1G61580
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3835
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G71300
| Predictedtwo hybrid | FSW = 0.0142
| Unknown | VPS52/SAC2 FAMILY PROTEIN |
| AT1G06720
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0344
| Unknown | INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G424401) HAS 7944 BLAST HITS TO 5342 PROTEINS IN 373 SPECIES ARCHAE - 33 BACTERIA - 667 METAZOA - 2609 FUNGI - 1045 PLANTS - 414 VIRUSES - 80 OTHER EUKARYOTES - 3096 (SOURCE NCBI BLINK) |
| AT1G25260
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2464
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
| AT2G03820
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0490
| Unknown | NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN |
| AT2G18220
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5449
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
| AT2G21440
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4281
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT3G15460
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4984
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT3G16840
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2557
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT3G55280
| PredictedAffinity Capture-MS | FSW = 0.3150
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G01560
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4262
| Unknown | MEE49 (MATERNAL EFFECT EMBRYO ARREST 49) |
| AT4G15770
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4172
| Unknown | RNA BINDING / PROTEIN BINDING |
| AT4G16630
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5466
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH28) |
| AT5G05450
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5436
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH18) |
| AT5G06360
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2374
| Unknown | RIBOSOMAL PROTEIN S8E FAMILY PROTEIN |
| AT5G14520
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4702
| Unknown | PESCADILLO-RELATED |
| AT5G20600
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4536
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK) |
| AT5G46840
| PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.3007
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT5G49930
| PredictedAffinity Capture-MS | FSW = 0.0158
| Unknown | EMB1441 (EMBRYO DEFECTIVE 1441) NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT1G79150
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4892
| Unknown | BINDING |
| AT2G40430
| PredictedAffinity Capture-MS | FSW = 0.1004
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK) |
| AT2G40700
| PredictedAffinity Capture-MS | FSW = 0.1339
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH17) |
| AT4G25730
| PredictedAffinity Capture-MS | FSW = 0.2005
| Unknown | FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN |
| AT4G30870
| PredictedAffinity Capture-MS | FSW = 0.0363
| Unknown | MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING |
| AT4G34910
| PredictedAffinity Capture-MS | FSW = 0.3240
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH16) |
| AT5G57160
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0771
| Unknown | ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING |
| AT5G61770
| Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3054
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
| AT5G65900
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5646
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT5G67380
| Predictedinteraction prediction | FSW = 0.1000
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
| AT1G71370
| Predictedinteraction prediction | FSW = 0.0986
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT5G39770
| Predictedinteraction prediction | FSW = 0.0742
| Unknown | DNA BINDING / ENDONUCLEASE/ NUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING |
| AT1G77050 | Predictedinteraction predictionCo-expression | FSW = 0.1882
| Unknown | DNA BINDING / ENDONUCLEASE/ NUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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