Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT5G55920 - ( nucleolar protein putative )

72 Proteins interacs with AT5G55920
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G18020

Predicted

Affinity Capture-MS

FSW = 0.1626

Class C:

nucleus

EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1614

Class C:

nucleus

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2018

Class C:

nucleus

RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G49010

Predicted

Affinity Capture-MS

FSW = 0.1725

Class C:

nucleus

ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G22440

Predicted

Affinity Capture-MS

FSW = 0.2893

Class C:

nucleus

60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT3G03920

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0285

Class C:

nucleus

GAR1 RNA-BINDING REGION FAMILY PROTEIN
AT3G01610

Predicted

Affinity Capture-MS

FSW = 0.3149

Class C:

nucleus

CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G11964Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2894

Class C:

nucleus

RNA BINDING
AT5G39740

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3883

Class C:

nucleus

60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT2G44860

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2554

Class C:

nucleus

60S RIBOSOMAL PROTEIN L24 PUTATIVE
AT5G04600

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4714

Class C:

nucleus

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G25630

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2305

Class C:

nucleus

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT1G72440

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.3972

Class C:

nucleus

EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT3G23620

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5720

Class C:

nucleus

BRIX DOMAIN-CONTAINING PROTEIN
AT3G16810

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5226

Class C:

nucleus

APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING
AT3G07050

Predicted

interaction prediction

Co-expression

FSW = 0.3600

Class C:

nucleus

GTP-BINDING FAMILY PROTEIN
AT3G58660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5544

Class C:

nucleus

60S RIBOSOMAL PROTEIN-RELATED
AT5G37720

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0677

Class C:

nucleus

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT1G65030

Predicted

interaction prediction

FSW = 0.1072

Class C:

nucleus

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G12860

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0770

Class C:

nucleus

NUCLEOLAR PROTEIN NOP56 PUTATIVE
AT3G54350

Predicted

two hybrid

Reconstituted Complex

co-fractionation

Co-fractionation

FSW = 0.0377

Class C:

nucleus

EMB1967 (EMBRYO DEFECTIVE 1967)
AT2G37990

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2343

Class C:

nucleus

RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN
AT3G20010

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0135

Class C:

nucleus

SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT4G08350

Predicted

Affinity Capture-MS

FSW = 0.0559

Class C:

nucleus

GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR
AT3G55620

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.4040

Class C:

nucleus

EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT5G52470

Predicted

co-fractionation

Co-fractionation

FSW = 0.0583

Class C:

nucleus

FIB1 (FIBRILLARIN 1) SNORNA BINDING
AT1G63810

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1085

Class C:

nucleus

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK)
AT5G15550

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4646

Class C:

nucleus

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G38940

Predicted

interaction prediction

FSW = 0.0119

Unknown

ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT4G18730Predicted

Affinity Capture-MS

FSW = 0.1317

Unknown

RPL16B STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G13580

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3280

Unknown

60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT5G43940

Predicted

Affinity Capture-MS

FSW = 0.1053

Unknown

HOT5 (SENSITIVE TO HOT TEMPERATURES 5) S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE/ S-NITROSOGLUTATHIONE REDUCTASE
AT1G11680

Predicted

Synthetic Lethality

FSW = 0.0153

Unknown

CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE
AT2G37600

Predicted

Affinity Capture-MS

FSW = 0.1632

Unknown

60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT1G74270

Predicted

Affinity Capture-MS

FSW = 0.1936

Unknown

60S RIBOSOMAL PROTEIN L35A (RPL35AC)
AT4G15000

Predicted

Affinity Capture-MS

FSW = 0.1238

Unknown

60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT3G54700

Predicted

Affinity Capture-MS

FSW = 0.0133

Unknown

CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT2G40360

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4495

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G50920

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5831

Unknown

GTP-BINDING PROTEIN-RELATED
AT3G22660

Predicted

Affinity Capture-MS

FSW = 0.4518

Unknown

RRNA PROCESSING PROTEIN-RELATED
AT1G61580

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3835

Unknown

RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G71300

Predicted

two hybrid

FSW = 0.0142

Unknown

VPS52/SAC2 FAMILY PROTEIN
AT1G06720

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0344

Unknown

INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G424401) HAS 7944 BLAST HITS TO 5342 PROTEINS IN 373 SPECIES ARCHAE - 33 BACTERIA - 667 METAZOA - 2609 FUNGI - 1045 PLANTS - 414 VIRUSES - 80 OTHER EUKARYOTES - 3096 (SOURCE NCBI BLINK)
AT1G25260

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2464

Unknown

ACIDIC RIBOSOMAL PROTEIN P0-RELATED
AT2G03820

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0490

Unknown

NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN
AT2G18220

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5449

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK)
AT2G21440

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.4281

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G15460

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4984

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT3G16840

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2557

Unknown

ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G55280

Predicted

Affinity Capture-MS

FSW = 0.3150

Unknown

RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G01560

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4262

Unknown

MEE49 (MATERNAL EFFECT EMBRYO ARREST 49)
AT4G15770

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4172

Unknown

RNA BINDING / PROTEIN BINDING
AT4G16630

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.5466

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH28)
AT5G05450

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5436

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH18)
AT5G06360

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.2374

Unknown

RIBOSOMAL PROTEIN S8E FAMILY PROTEIN
AT5G14520

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4702

Unknown

PESCADILLO-RELATED
AT5G20600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4536

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK)
AT5G46840

Predicted

Affinity Capture-MS

Synthetic Lethality

FSW = 0.3007

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G49930

Predicted

Affinity Capture-MS

FSW = 0.0158

Unknown

EMB1441 (EMBRYO DEFECTIVE 1441) NUCLEIC ACID BINDING / ZINC ION BINDING
AT1G79150

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4892

Unknown

BINDING
AT2G40430

Predicted

Affinity Capture-MS

FSW = 0.1004

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK)
AT2G40700

Predicted

Affinity Capture-MS

FSW = 0.1339

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH17)
AT4G25730

Predicted

Affinity Capture-MS

FSW = 0.2005

Unknown

FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN
AT4G30870

Predicted

Affinity Capture-MS

FSW = 0.0363

Unknown

MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT4G34910

Predicted

Affinity Capture-MS

FSW = 0.3240

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH16)
AT5G57160

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0771

Unknown

ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING
AT5G61770

Predicted

interaction prediction

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.3054

Unknown

PPAN (PETER PAN-LIKE PROTEIN)
AT5G65900

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5646

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT5G67380

Predicted

interaction prediction

FSW = 0.1000

Unknown

CKA1 (CASEIN KINASE ALPHA 1) KINASE
AT1G71370

Predicted

interaction prediction

FSW = 0.0986

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT5G39770

Predicted

interaction prediction

FSW = 0.0742

Unknown

DNA BINDING / ENDONUCLEASE/ NUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING
AT1G77050Predicted

interaction prediction

Co-expression

FSW = 0.1882

Unknown

DNA BINDING / ENDONUCLEASE/ NUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454