Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G01610 - ( CDC48C ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding )
46 Proteins interacs with AT3G01610| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G09840
   | Experimental | FSW = 0.0261
| Class A:plasma membranenucleusendoplasmic reticulumClass B:cytosol | CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING |
| AT3G49010
| PredictedAffinity Capture-MS | FSW = 0.0824
| Class C:plasma membranenucleus | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G43170
| PredictedAffinity Capture-MS | FSW = 0.1436
| Class C:plasma membranenucleus | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G01250
| PredictedAffinity Capture-MS | FSW = 0.0452
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
| AT1G22780
| PredictedAffinity Capture-MS | FSW = 0.0120
| Class C:plasma membrane | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G19990
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0029
| Class C:plasma membrane | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
| AT2G47610
| PredictedAffinity Capture-MS | FSW = 0.1357
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
| AT5G43530
| Predictedtwo hybrid | FSW = 0.0177
| Class C:nucleus | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
| AT5G04600
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2698
| Class C:nucleus | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT1G72440
| PredictedAffinity Capture-MS | FSW = 0.3974
| Class C:nucleus | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
| AT3G23620
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3278
| Class C:nucleus | BRIX DOMAIN-CONTAINING PROTEIN |
| AT3G16810
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3717
| Class C:nucleus | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
| AT5G55920
| PredictedAffinity Capture-MS | FSW = 0.3149
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
| AT3G57660
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0409
| Class C:nucleus | NRPA1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ ZINC ION BINDING |
| AT3G58660
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2606
| Class C:nucleus | 60S RIBOSOMAL PROTEIN-RELATED |
| AT5G37500
| PredictedGene fusion methodCo-expression | FSW = 0.0450
| Class C:nucleus | GORK (GATED OUTWARDLY-RECTIFYING K+ CHANNEL) CYCLIC NUCLEOTIDE BINDING / INWARD RECTIFIER POTASSIUM CHANNEL/ OUTWARD RECTIFIER POTASSIUM CHANNEL |
| AT5G15550
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3902
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G34030 | PredictedAffinity Capture-MS | FSW = 0.0409
| Unknown | 40S RIBOSOMAL PROTEIN S18 (RPS18B) |
| AT3G13580
| PredictedAffinity Capture-MS | FSW = 0.2290
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
| AT1G06380
| PredictedAffinity Capture-MS | FSW = 0.2084
| Unknown | RIBOSOMAL PROTEIN-RELATED |
| AT2G40360
| PredictedAffinity Capture-MS | FSW = 0.3128
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G17550
| PredictedAffinity Capture-MS | FSW = 0.0113
| Unknown | PEX19-2 |
| AT3G03490
| PredictedAffinity Capture-MS | FSW = 0.0093
| Unknown | PEX19-1 (PEROXIN 19-1) |
| AT1G79250
| Predictedbiochemical | FSW = 0.0192
| Unknown | AGC17 (AGC KINASE 17) KINASE |
| AT1G50920
| PredictedAffinity Capture-MS | FSW = 0.2773
| Unknown | GTP-BINDING PROTEIN-RELATED |
| AT3G42830
| PredictedAffinity Capture-MS | FSW = 0.0218
| Unknown | RING-BOX PROTEIN ROC1/RBX1/HRT1 PUTATIVE |
| AT5G03340
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0150
| Unknown | CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE |
| AT1G61580
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2184
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G20570
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0213
| Unknown | RBX1 (RING-BOX 1) PROTEIN BINDING |
| AT3G12280
| PredictedPhenotypic Enhancement | FSW = 0.0025
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
| AT5G15020
| Predictedtwo hybrid | FSW = 0.0121
| Unknown | SNL2 (SIN3-LIKE 2) |
| AT1G29940 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0116
| Unknown | NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
| AT1G79150
| PredictedAffinity Capture-MS | FSW = 0.3844
| Unknown | BINDING |
| AT2G18220
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3902
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
| AT2G21440
| PredictedAffinity Capture-MS | FSW = 0.3515
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT3G15460
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3250
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT3G57870
| PredictedSynthetic Lethality | FSW = 0.0096
| Unknown | SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE |
| AT4G01560
| PredictedAffinity Capture-MS | FSW = 0.4749
| Unknown | MEE49 (MATERNAL EFFECT EMBRYO ARREST 49) |
| AT4G15770
| PredictedSynthetic LethalityAffinity Capture-MSAffinity Capture-MS | FSW = 0.3371
| Unknown | RNA BINDING / PROTEIN BINDING |
| AT4G16630
| PredictedAffinity Capture-MS | FSW = 0.4507
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH28) |
| AT5G05450
| PredictedAffinity Capture-MS | FSW = 0.4473
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH18) |
| AT5G20600
| PredictedAffinity Capture-MS | FSW = 0.3459
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK) |
| AT5G65900
| PredictedAffinity Capture-MS | FSW = 0.2584
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT1G29965
| PredictedAffinity Capture-MS | FSW = 0.1636
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AA) |
| AT1G52930
| PredictedAffinity Capture-MS | FSW = 0.3165
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT3G22150
| PredictedGene fusion method | FSW = 0.0600
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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