Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G15460 - ( brix domain-containing protein )
69 Proteins interacs with AT3G15460Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09630 | PredictedAffinity Capture-MS | FSW = 0.2090
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT3G49010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1677
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G34480 | PredictedAffinity Capture-MS | FSW = 0.1113
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
AT1G16240 | PredictedReconstituted Complex | FSW = 0.0327
| Unknown | SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR |
AT5G10350 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0336
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT5G22440 | PredictedAffinity Capture-MS | FSW = 0.3130
| Unknown | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
AT1G11870 | Predictedinterologs mapping | FSW = 0.0247
| Unknown | SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE |
AT2G29690 | PredictedAffinity Capture-MSReconstituted Complex | FSW = 0.0688
| Unknown | ASA2 (ANTHRANILATE SYNTHASE 2) ANTHRANILATE SYNTHASE |
AT3G13580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3638
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
AT3G01610 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3250
| Unknown | CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G39740 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3848
| Unknown | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT3G11964 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2719
| Unknown | RNA BINDING |
AT2G33370 | PredictedAffinity Capture-MS | FSW = 0.1357
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23B) |
AT4G15000 | PredictedAffinity Capture-MS | FSW = 0.1399
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
AT2G40360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3554
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G63810 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1123
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
AT2G44860 | PredictedAffinity Capture-MS | FSW = 0.1998
| Unknown | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
AT5G04600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3973
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G25630 | PredictedAffinity Capture-MS | FSW = 0.2087
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT3G58660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4958
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT3G55620 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3468
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT1G72440 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4229
| Unknown | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
AT3G23620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4242
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT4G17390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3007
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
AT5G54840 | PredictedReconstituted Complex | FSW = 0.0506
| Unknown | SGP1 GTP BINDING |
AT3G16810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4889
| Unknown | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
AT5G48240 | PredictedAffinity Capture-MS | FSW = 0.3164
| Unknown | UNKNOWN PROTEIN |
AT5G55920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4984
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT2G19385 | PredictedAffinity Capture-MS | FSW = 0.0749
| Unknown | ZINC ION BINDING |
AT3G62310 | PredictedAffinity Capture-MS | FSW = 0.1806
| Unknown | RNA HELICASE PUTATIVE |
AT2G38560 | Predictedtwo hybridReconstituted Complexinterologs mappingtwo hybridinterologs mappingReconstituted Complexinterologs mappingSynthetic Lethality | FSW = 0.0079
| Unknown | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT2G38880 | Predictedinterologs mapping | FSW = 0.0303
| Unknown | NF-YB1 (NUCLEAR FACTOR Y SUBUNIT B1) TRANSCRIPTION FACTOR |
AT5G15550 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4117
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G17130 | PredictedAffinity Capture-MSReconstituted Complex | FSW = 0.0729
| Unknown | IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2) ISOCITRATE DEHYDROGENASE (NAD+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT3G45280 | PredictedReconstituted Complex | FSW = 0.1059
| Unknown | SYP72 (SYNTAXIN OF PLANTS 72) PROTEIN TRANSPORTER |
AT1G50920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5377
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT3G22660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.5075
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
AT1G61580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.3935
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G20050 | Predictedtwo hybridtwo hybridtwo hybridReconstituted Complextwo hybridtwo hybridtwo hybridReconstituted Complexinterologs mapping | FSW = 0.0411
| Unknown | ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT2G17870 | PredictedAffinity Capture-MS | FSW = 0.0556
| Unknown | COLD-SHOCK DNA-BINDING FAMILY PROTEIN |
AT1G16350 | PredictedAffinity Capture-MS | FSW = 0.0439
| Unknown | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE |
AT1G25260 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2272
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT1G34580 | PredictedAffinity Capture-MSAffinity Capture-MSReconstituted Complex | FSW = 0.0318
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G79150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4051
| Unknown | BINDING |
AT2G18220 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5268
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
AT2G21440 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction prediction | FSW = 0.4049
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G32160 | PredictedAffinity Capture-MS | FSW = 0.0038
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK) |
AT2G34357 | PredictedAffinity Capture-MS | FSW = 0.2364
| Unknown | BINDING |
AT2G35390 | Predictedtwo hybrid | FSW = 0.0150
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT1G15440 | PredictedAffinity Capture-MS | FSW = 0.0413
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G60780 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0854
| Unknown | HAP13 (HAPLESS 13) PROTEIN BINDING |
AT3G10530 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0586
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G18740 | PredictedAffinity Capture-MS | FSW = 0.2107
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
AT3G22320 | Predictedtwo hybrid | FSW = 0.0129
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G24830 | PredictedAffinity Capture-MS | FSW = 0.2183
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
AT4G01560 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4585
| Unknown | MEE49 (MATERNAL EFFECT EMBRYO ARREST 49) |
AT4G15770 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.3810
| Unknown | RNA BINDING / PROTEIN BINDING |
AT4G16630 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5221
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH28) |
AT4G18905 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1020
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G34910 | PredictedAffinity Capture-MS | FSW = 0.2817
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH16) |
AT5G04510 | Predictedbiochemical | FSW = 0.0049
| Unknown | PDK1 (3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1) 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE/ KINASE/ PHOSPHOINOSITIDE BINDING / PROTEIN BINDING / PROTEIN KINASE |
AT5G05450 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5597
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH18) |
AT5G14520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction predictionCo-expression | FSW = 0.3570
| Unknown | PESCADILLO-RELATED |
AT5G20600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4669
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK) |
AT5G46840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3289
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G61770 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2991
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
AT5G65900 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5644
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT5G66360 | PredictedReconstituted ComplexAffinity Capture-MS | FSW = 0.0749
| Unknown | RIBOSOMAL RNA ADENINE DIMETHYLASE FAMILY PROTEIN |
AT3G55280 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3239
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454