Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G60780 - ( HAP13 (HAPLESS 13) protein binding )
38 Proteins interacs with AT1G60780Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G50850 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0346
| Unknown | MAB1 (MACCI-BOU) CATALYTIC/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT5G22440 | PredictedAffinity Capture-MS | FSW = 0.0586
| Unknown | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
AT3G08530 | Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.0917
| Unknown | CLATHRIN HEAVY CHAIN PUTATIVE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0093
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G46630 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2017
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
AT1G71820 | PredictedPhenotypic Enhancement | FSW = 0.0354
| Unknown | SEC6 |
AT2G20580 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0199
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT4G11380 | Predictedinteraction predictionin vivotwo hybridAffinity Capture-MSAffinity Capture-Westernin vitrointerologs mappingEnriched domain pairCo-expression | FSW = 0.1432
| Unknown | BETA-ADAPTIN PUTATIVE |
AT4G15780 | Predictedtwo hybridin vitrotwo hybridAffinity Capture-MSReconstituted ComplexAffinity Capture-Western | FSW = 0.0170
| Unknown | ATVAMP724 |
AT4G23460 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-Western | FSW = 0.2332
| Unknown | BETA-ADAPTIN PUTATIVE |
AT3G10730 | Predictedtwo hybrid | FSW = 0.0260
| Unknown | SAD1/UNC-84-LIKE 2 FAMILY PROTEIN |
AT3G58660 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0793
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT3G55620 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0710
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT4G02930 | Predictedtwo hybridAffinity Capture-MSinteraction prediction | FSW = 0.0106
| Unknown | ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE |
AT5G22100 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0357
| Unknown | RNA CYCLASE FAMILY PROTEIN |
AT1G10490 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0619
| Unknown | UNKNOWN PROTEIN |
AT1G50920 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0711
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT1G61580 | PredictedAffinity Capture-MS | FSW = 0.0774
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G60070 | Predictedin vivoAffinity Capture-MS | FSW = 0.2179
| Unknown | BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT2G32850 | Predictedin vitroin vitroAffinity Capture-MS | FSW = 0.0508
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G06634 | Predictedtwo hybrid | FSW = 0.0115
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT4G35410 | Predictedin vivoAffinity Capture-MS | FSW = 0.1033
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT4G05520 | PredictedReconstituted Complex | FSW = 0.0463
| Unknown | ATEHD2 (EPS15 HOMOLOGY DOMAIN 2) GTP BINDING / GTPASE/ CALCIUM ION BINDING |
AT1G13160 | PredictedAffinity Capture-MS | FSW = 0.0956
| Unknown | SDA1 FAMILY PROTEIN |
AT1G23900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionEnriched domain pairGene neighbors method | FSW = 0.3023
| Unknown | GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT1G49760 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0160
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT2G17380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction predictionEnriched domain pairCo-expression | FSW = 0.2250
| Unknown | AP19 PROTEIN BINDING / PROTEIN TRANSPORTER |
AT2G21440 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0767
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G15460 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0854
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT3G24080 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0379
| Unknown | KRR1 FAMILY PROTEIN |
AT4G18905 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0204
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G02880 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0268
| Unknown | UPL4 UBIQUITIN-PROTEIN LIGASE |
AT5G08420 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0230
| Unknown | RNA BINDING |
AT5G46190 | PredictedAffinity Capture-MS | FSW = 0.0473
| Unknown | KH DOMAIN-CONTAINING PROTEIN |
AT1G10730 | Predictedin vivoAffinity Capture-MSin vivoGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6531
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
AT5G55810 | Predictedinteraction prediction | FSW = 0.0515
| Unknown | ATNMNAT (A THALIANA NICOTINATE/NICOTINAMIDE MONONUCLEOTIDE ADENYLTRANSFERASE) NICOTINAMIDE-NUCLEOTIDE ADENYLYLTRANSFERASE/ NICOTINATE-NUCLEOTIDE ADENYLYLTRANSFERASE |
AT4G24550 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1894
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
AT1G56590 | PredictedPhylogenetic profile method | FSW = 0.1196
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454