Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G11380 - ( beta-adaptin putative )
46 Proteins interacs with AT4G11380| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
| AT1G33120 | PredictedAffinity Capture-MS | FSW = 0.0379
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L9 (RPL90B) |
AT1G43170
   | PredictedAffinity Capture-MS | FSW = 0.0122
| Class C:plasma membrane | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G43160
| Predictedtwo hybridtwo hybrid | FSW = 0.0799
| Class C:plasma membrane | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
| AT3G11130
| Predictedin vitro | FSW = 0.0570
| Class C:plasma membrane | CLATHRIN HEAVY CHAIN PUTATIVE |
| AT1G18540
| PredictedAffinity Capture-MS | FSW = 0.0104
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
| AT3G08530
| Predictedsynthetic growth defectsynthetic growth defectsynthetic growth defectAffinity Capture-WesternAffinity Capture-Westerninteraction prediction | FSW = 0.1225
| Class C:plasma membrane | CLATHRIN HEAVY CHAIN PUTATIVE |
| AT5G22770
| Predictedin vitroAffinity Capture-MS | FSW = 0.1632
| Class C:plasma membrane | ALPHA-ADR (ALPHA-ADAPTIN) BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
| AT4G23460
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2639
| Class C:plasma membrane | BETA-ADAPTIN PUTATIVE |
| AT2G37600
| PredictedAffinity Capture-MS | FSW = 0.0194
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
| AT5G46630
| Predictedtwo hybridAffinity Capture-MS | FSW = 0.0546
| Class C:plasma membrane | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
| AT1G59740
| PredictedAffinity Capture-MS | FSW = 0.0076
| Class C:plasma membrane | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
| AT3G46900
| PredictedAffinity Capture-MS | FSW = 0.0095
| Class C:plasma membrane | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
| AT5G63400
| Predictedsynthetic growth defect | FSW = 0.0059
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
| AT5G11710
| Predictedtwo hybrid | FSW = 0.0874
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED |
| AT1G19720
| PredictedGene fusion method | FSW = 0.0437
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
| AT3G19170
| Predictedsynthetic growth defect | FSW = 0.0131
| Unknown | ATPREP1 (PRESEQUENCE PROTEASE 1) METALLOENDOPEPTIDASE |
| AT3G48190
| PredictedProtein-peptide | FSW = 0.0712
| Unknown | ATM (ATAXIA-TELANGIECTASIA MUTATED) 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE |
| AT2G40290
| Predictedtwo hybrid | FSW = 0.0053
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
| AT3G06720
| Predictedinteraction prediction | FSW = 0.0204
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
| AT1G24310
| Predictedtwo hybrid | FSW = 0.0409
| Unknown | UNKNOWN PROTEIN |
| AT3G53760
| Predictedtwo hybrid | FSW = 0.0408
| Unknown | TUBULIN FAMILY PROTEIN |
| AT5G40820
| PredictedProtein-peptide | FSW = 0.0160
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
| AT4G03430
| Predictedtwo hybridtwo hybrid | FSW = 0.0031
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
| AT5G46190
| Predictedtwo hybrid | FSW = 0.0267
| Unknown | KH DOMAIN-CONTAINING PROTEIN |
| AT1G03900
| Predictedtwo hybrid | FSW = 0.1200
| Unknown | ATNAP4 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 4) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / TRANSPORTER |
| AT1G47830
| PredictedAffinity Capture-MSin vitro | FSW = 0.0162
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
| AT1G60070
| Predictedtwo hybrid | FSW = 0.2599
| Unknown | BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
| AT1G60780
| Predictedinteraction predictionin vivotwo hybridAffinity Capture-MSAffinity Capture-Westernin vitrointerologs mappingEnriched domain pairCo-expression | FSW = 0.1432
| Unknown | HAP13 (HAPLESS 13) PROTEIN BINDING |
| AT2G20635 | PredictedAffinity Capture-MStwo hybridin vitro | FSW = 0.0096
| Unknown | ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT4G09140
| Predictedtwo hybrid | FSW = 0.0160
| Unknown | MLH1 (MUTL-HOMOLOGUE 1) PROTEIN BINDING BRIDGING |
| AT5G14670
| Predictedin vivoin vitro | FSW = 0.0164
| Unknown | ATARFA1B (ADP-RIBOSYLATION FACTOR A1B) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
| AT4G25950
| Predictedtwo hybrid | FSW = 0.0177
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT4G32820
| Predictedin vivo | FSW = 0.0413
| Unknown | BINDING |
| AT2G47090
| Predictedsynthetic growth defect | FSW = 0.0205
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
| AT1G15440
| PredictedAffinity Capture-MS | FSW = 0.0125
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT2G31020
| PredictedAffinity Capture-MS | FSW = 0.0072
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
| AT2G18100
| PredictedAffinity Capture-MS | FSW = 0.1029
| Unknown | UNKNOWN PROTEIN |
| AT1G10730
| Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybridEnriched domain pairCo-expression | FSW = 0.1671
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
| AT1G23900
| Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybrid | FSW = 0.2599
| Unknown | GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
| AT2G17380
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction predictionEnriched domain pairCo-expression | FSW = 0.1929
| Unknown | AP19 PROTEIN BINDING / PROTEIN TRANSPORTER |
| AT1G29940 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0199
| Unknown | NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
| AT5G01760
| PredictedPhenotypic Enhancement | FSW = 0.0703
| Unknown | VHS DOMAIN-CONTAINING PROTEIN / GAT DOMAIN-CONTAINING PROTEIN |
| AT5G19820
| Predictedtwo hybridinteraction prediction | FSW = 0.0170
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
| AT5G05920
| Predictedinteraction predictiontwo hybrid | FSW = 0.1036
| Unknown | DHS (DEOXYHYPUSINE SYNTHASE) |
| AT1G02690
| Predictedtwo hybrid | FSW = 0.0221
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
| AT3G11010
| PredictedGene fusion method | FSW = 0.0406
| Unknown | ATRLP34 (RECEPTOR LIKE PROTEIN 34) KINASE/ PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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