Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G59740 - ( proton-dependent oligopeptide transport (POT) family protein )
40 Proteins interacs with AT1G59740Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G11260 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappingsynthetic growth defect | FSW = 0.0687
| Class C:plasma membrane | STP1 (SUGAR TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G33440 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7427
| Class C:plasma membrane | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT4G21680 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3479
| Class C:plasma membrane | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G12110 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5811
| Class C:plasma membrane | NRT11 NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER |
AT3G53960 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5290
| Class C:plasma membrane | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT3G54140 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7089
| Class C:plasma membrane | PTR1 (PEPTIDE TRANSPORTER 1) DIPEPTIDE TRANSPORTER/ TRANSPORTER/ TRIPEPTIDE TRANSPORTER |
AT3G16180 | PredictedGene fusion methodPhylogenetic profile method | FSW = 0.6840
| Class C:plasma membrane | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT3G11730 | PredictedAffinity Capture-MS | FSW = 0.0101
| Class C:plasma membrane | ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
AT1G13320 | PredictedAffinity Capture-MS | FSW = 0.0253
| Class C:plasma membrane | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT4G11380 | PredictedAffinity Capture-MS | FSW = 0.0076
| Class C:plasma membrane | BETA-ADAPTIN PUTATIVE |
AT2G02040 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7089
| Unknown | PTR2 (PEPTIDE TRANSPORTER 2) DIPEPTIDE TRANSPORTER/ HIGH AFFINITY OLIGOPEPTIDE TRANSPORTER/ NITRATE TRANSMEMBRANE TRANSPORTER/ PEPTIDE TRANSPORTER/ TRANSPORTER/ TRIPEPTIDE TRANSPORTER |
AT1G52190 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7385
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0105
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G70580 | PredictedAffinity Capture-MSAffinity Capture-MSinterologs mappingsynthetic growth defectAffinity Capture-MS | FSW = 0.0736
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT3G66656 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0527
| Unknown | AGL91 TRANSCRIPTION FACTOR |
AT2G18450 | PredictedAffinity Capture-MS | FSW = 0.0211
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0212
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G06830 | PredictedAffinity Capture-MS | FSW = 0.0164
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT5G06150 | PredictedAffinity Capture-Westerninterologs mappingAffinity Capture-MS | FSW = 0.0251
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G74320 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0527
| Unknown | CHOLINE KINASE PUTATIVE |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.0229
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT3G15470 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0155
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT4G29140 | PredictedAffinity Capture-MS | FSW = 0.0256
| Unknown | MATE EFFLUX PROTEIN-RELATED |
AT5G17000 | PredictedAffinity Capture-MS | FSW = 0.0368
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G68570 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7576
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT2G37900 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7385
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G19640 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7385
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G32450 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7385
| Unknown | NRT15 (NITRATE TRANSPORTER 15) NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER |
AT5G13400 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5371
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT2G02020 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7427
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G27040 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2785
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT5G46040 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7234
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G46050 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7385
| Unknown | PTR3 (PEPTIDE TRANSPORTER 3) DIPEPTIDE TRANSPORTER/ TRANSPORTER/ TRIPEPTIDE TRANSPORTER |
AT2G40460 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6950
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT2G26690 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7385
| Unknown | NITRATE TRANSPORTER (NTP2) |
AT1G62200 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6817
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G01180 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6950
| Unknown | PTR5 (PEPTIDE TRANSPORTER 5) DIPEPTIDE TRANSPORTER/ TRANSPORTER |
AT1G22540 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7089
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G18880 | PredictedPhylogenetic profile method | FSW = 0.7234
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G14230 | PredictedGene fusion method | FSW = 0.0481
| Unknown | PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454